LOC110520284 (LOC106586429)


Basic Information

Item Value
gene id LOC110520284
gene name LOC106586429
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57595333 ~ 57609026 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974790.1
CTAGTAAAATACACCTCAAATTAAGTTTCGTTTCAACTGAAACGCGCCGAATTGAGGAAGTCGAAGGAAAGGAATAAAACTTTTCCAGAAGAGACGGACAGCTAAAGCTCACCTCCGCATGCCATTTTTTCAGTATAACACATACTCGTTTAAAATACCTATTTCAACCAAGTCTTTGAAAATCTGTAATATTTCTATACTAGTGTTCAATTTAATTGGCTTGGAAAGACTTGCTATTGTTTACACCATATTTCAGCGAAGTCGAAAGCTTGCCAAATTCCGCATTCTTAGGTTTATTCTCTTTCGACCTAATCGAACAATTTCCACACCGACCGTCGTTTCTGCTTACCAGTGAGACCGGAAAACTATTTCATGTTGCTGTCAGGAAATCTATAATAATGAAAGCATGTTGCAGCTACACAGCAGCACAGCATTTATGCGGAAATGGTGAAGACAGAAAACAAAGTGTTTGACTGAGAAACCAGTTCACTGACAAGGATCCAAAGGATTTCAGTAAGGCTGAACAAGTCCAAATGGAGAATGAAGAGGAAGGCAAACCAACTGACCTGCCAGATGAGATTAAGGATTGGAATAAACATCACGTGAAACAATGGGCTCTCAACGAGGCTTGTGTGGATGGTGAATCTGCAAATATCTTGCTTCGGCAGAACATTAATGGGCCCAGTCTTTTACTTTTAGAAAAATCTGATTTACTAGAGGTGGGTGTCACACTGGGGCCTGCAAAGTTGATCATTCACAAGAGGGATGAACATTTGAAATTTAAGAAAGAGCAGTTGAGTAGCCCAACAACAAATCAGTCTGGGAGACCGTGCAAGCCGTACCCTTTTCATCGACACCATGATGCCTGCAGATACAAGGCGAACAGCGTTCTTGATGTAACAGAATCCGGTGCATCAGACTATATCGAACCCTGTCATGAATATAAAGGATACATCCATATGTCAGAGGCAGCTGTGGAGAGCAAAATGGAAAAGTTCACTGATGAGGTTATTCGATTTGCAGCAGCCTGCATGAATAGCCGCACTAATGGCACCATACATTTTGGAGTTGGTGACAAGCCAGACTTTGTTCATGGGCAAGTTTTGGGAGTTAGCGTCCTGGACAAAGAGGCATATGTCAATGCTCTGCCACAAGCCATTGGGGGTCATTTTGAGTATAAACATATCCAGACAGCCAAGATGTGCATCAAACCACCTCGATTTGTTGAGGTTCTCAATCCTGATATGACATCCTCAGAGAAGTATGTGATAGAAGTGGACATCGTGCCAGACTTTGTGATCTGTCAAGAGAACTTCTATCACGTTTTCCGCTTGGATACAAGGAAATCAAAGAGGAAGTCCAAAAGcaaagaaacagagaaagaggagaaaaaaCTCTTCTTCATTCGTGATCACAGCAGCAGCAGGGATCTCCTTGCACTAACCACAAAGGAAGAATACAATAGGTTTCTCGACAATGTGCCACAGCTGTCACTGCTAAGAAAACAAGCAGAGGAAAATCGCCTTAGTGTGGTTAAAAGTAGTGTCCAGGGCTCCAGACTAAGTGAAATGATAACAGGTGGATCCCAATCCTTAGACAAGTCCCACTTCGAGCGGTATTTGATAGTGACAAACAAATCACATTTAGTTCAATTGGAATCTCTGGGATTTATTTCTGAACTAAACCCAACTGCTGTTTTGGACTTTGACCCTGAGTCGGCAAAACATGGATTGATGAAGCACTTTGAAGACCAGAGTACAATAAATATCCACTTGCCAGTACAATATAAAATCACAGAGGCTGTCGAGGACATTGCTAGCAAGCTAAAACTGACTCGAAACACCAGCTGGATCCTCTGCAATGGGGGTATCGAAAGAGAGAGACCCTCAGATGTAGATGACTGGTTAATAGAGAAAGGAGCGTCTGTACGAAATGTGATTTCATTTCTGTGTCGGAAAGATGTGCTACCACACAAGAGATTCCTGGTTATTTTTATATTGCTGTCTACTGTGAGTGAGAAAATGGACCCTCTGCTTGAGACCTTCAGCACATTCTGGCAGGAGCTCAGAGGAACAGAGCAAATACTTTGCATCTGTGAAAATGAAGAAGCATTCACCTGCTGGAGGGACCTGATTGAATCACGCTATGGATTAGACATTAAAGCAAGATCAATATATCAGCTCAGTTTTGCTGAAGTTAACGGCACCGTCCTCAGTCTGTGGTCAGACAACCGGAAATCCAGCCGTTTCCTACCCTGTGGAGGAGGCAGCAAAGTGATGTTAACAAAGAAAGAAGAGGGCAGCCTAGACATCCTGAATGTTCTGTGTGTGAATCAGTGTGAGGGAGGAAATGAAGACAAGGCCATCATACAGGAGAAGTTCTACAAAGGAGGAAAGGTGTTATGGTGGAACTTCTATTTCTCAGAGCAGCCAGGATCCATGCCATTCATCAAACGGGACAAGTTTGACTTCATCATGAACACTGTCCTACCAGATTTGAGCTCTTTGAGAAAAGCTTGTGAGTCCTTCAAACTTTTGCATGTCCCAGGATGTGGTGGAACTACACTAGCCATGCATATATTATGGGCACTGAAAGACAAGTTCCGTTGTGCTGTTCTGAGGGACAGAACCGCGGATCATGTTGTTGTTGCCGAGCAGGTGGTCAAGCTACTGATGTATGAGACAACAGAACAATCGTCCCGGATTCCTGTGTTGCTCATGCTAGATGACTTTGAGGAGATGGATGACGCATATGATTTGCAGCAGCTCATTGAGAAGGAATGTGTCAAGAAGGACATTGGATCTAGGTCCCCGCAGGTCATTCTACTCAATTGCATGAGGGCTGAGTCTTGGGAGAAGACTGAATCAACTGAAGACACTGTGTTCATTGGCAATAACCTCTCTGAAATGGAGCAGAGGCAGTTCGAGAAAAAACTGGAGGAGATTGAGAAGACCTACAAGAATGCAGACACATTCTACGCTTTCATGATCATGAAGAAGAACTTTTCACCCGAGTATATACAGGGTGTGGCTCGCAACACCCTAAAGAGCTTCAACATAAATCACAAACATGCACAACTCATTGCTGTTCTGGTCTTGTTGAATGTCTACTGCAAGGGTGCAacactctcagtctctctctgtgaagAGTTTCTTGGCCTCCAGACCAAGCCACATAGTGGGTCCTCTGATGTTAAGGCTGGATTTGGGAAGTTTTCCACTCTAGTGACCTGCTGCACAGAAGAGACTAAGGTTGTATTCGAGGCAGTGAGAATGATCCACTCAAGCATGGCCGTGCACTGTTTGAAGGAGCTTACAACCACATACAGTGTAACCAAAGCTGAGATCACTGATCTACTGCTCACCACAGACAAGCTTTATGAGTGCATACAGGGCAAAGGTAAACTCATGAAGGATGTTCACACCATGTTAGTGAAAAGACATCACTCAGTCAAGAGTGAAGATTCTAAGTTTTCACCTCTCATCCAGGATATTGCAAAGGAGACACCAGGTGTTGAAGAAAAGGTTCTATTCAATGCAGCCAAGCGCTTTGAAAAAGATGCTGTCATCTCTCAGCTTCTTGCCAGATACCAATACCTGAAGAAAAGGGATTTCAGGGAGGCAAAGGACTGGGCAAAGATTGCAAAAGATCTTTCCAGAGATAACTCCTACATTTCTGACACATCTGCACAAGTGATCAAGCATGAGCTAAAGATTGATATACAAAGTGACAAAGAAGATCCCATAAGACCTGAAAGGCTCAAAGGCTATCTTAGAACGGCCCAGTCAGCAACAGAGGCCTTCAGGGATACACAGGAAATTGCAAAGAAGGAGGCTACTCTGAGAGTacaaaacaagagagacaacagcCCTTTCAACACTGCAGGGTGCCTTGGAGAAATTCAGGTTGCAGTCATCATCATCGAAATACTGGAAAAATGTCCAGTGTTTTCTTCAGGCAATGTCCGTCATGACATTCTGAGTGAAGTTCTGTCTGGCAAAATTACAATCCAAGATGTTATGAGGAATGATTCCAGACGTAACAAACATGCCTCATATTACTACATTCTCAGTGACTTTGAATATCTTCTGTACAACCTTAAATATAACATGAAGAGGCACTTTGATTTTCTTGACAGCTTTTATGTCAACTTGGGTCCCAGGTTCACCCTGAAAGACAGTCGAGAGGAAAGAACTCGACAGAAGCTCTTCCAGTGCTTTCAAAGATACAGTGACCTCTTTTGCAAGACAGATTCCACAGAATTAATGAAAAACAAGAACCTGAAAATCAGCATCCAAATTCACAAGGCAAGGCAATTTTTGGAGAGTAGAAAAACTGATACTCATTCAGGGATTCTGGATTGCCTCTCCAACGATACCTCAGGTGACATGATGCAAAAGATAGTCCTGCAGTATGACTTCATTCTGAGTAAAGATCCTGAAAGGAGCGTTAGAGAAATGGTCAATTTCATCTATGCCAATGTTGTGCTAAGCTGTGTCAAACCTGAATCTCAACACCTTCGCCCGTATAAGATCCTTGTTGATCTTCTTTGCCAGGTTCTTCAAGGTCAAATCCCATATGGTGAAAGTTTATCATTGCACTTCATTGCTGTAACTCTGCTGTGGCCACAACATATCCTCATGTCACAACCAGTGGCATCTCAGAAGTTGGGAAGCTATGTGTCACAGATGCGGACATCATACTGGAACGAGATGAAATCTGTTTTCAATGGAAAGTTGCCTGTTGTCCATTTCTTCTTGGGGAAGAAGCCGGGCTATGCTTGCCTAGTTCGCCTTAGGGAAATCATGTGGTGTGTAAGACCAGAAGAAGACTTTGATTCACTTTGGACAAATGGCAAAATATGGAAGCATGAGAGAGTCAAGGAGCTCCTTTACAGAGTGACAGGAGAGGTACAAAGGAAATTAATTCTGGCAGATACCAGGAACGCAGGCTTAAAGATAGAAGTCAGTgcaatgtacaaaagtcaactctGTGGAAAAGAGCAGGGATCAAAAGTATCATTTTTCATTGGTTTCTCAATGAAGGGTCCACTGGCTTTTGACATCGATTGAAGAAGAGCCCAATTGATATGCAGTCAgaatatctacataggcgtagaggcccattatcagcaaccatcactcctgtgttccaatggcacgttgtattagctaatccaagtttatcattttaaaaggctaattgatcattagaaaacacttttgcaattatgttagcaccgctgaaaactgttgttctcattaaagcagcaat
>TU315274
tccaagtttatcattttaaaaggctaattgatcattagaaaacacttttgcaattatgttatgaaaactgttgttctcattaaagcagcaataaaactgtccttctttagactaattgagtatctgaagcatcagcatttgtgggttcgattacaggctcaaaattaccagaaacaaagacctttgttctgaaacttgtcagtctattcttgttctgagaaataaatgctattccatgcgagaaattgccaagaaactgaagatctcgtactgtgtactactcccttcacagaacagcgcaaacggtctctaacagaatagaaagaggagtgggaggctcaggtgcacaactgagcaagaggacaagtacattcatgtctatgTTCACCGACTCGTTATCACAGGGCTCTCTCCCCCCGACGCTAACCCAAGCCTCCATCTCGTATACTTAAGAAAGATAAAGATCCGGCGGAATGTGGTGGATATCGGCCCATTTCACTTTTGAACGCTGATGTTAAATTATTAGCTAAGGTTCCAGCATGTCAGTTGGAACCCTGCCTTCAGGATCTCATATCTGATGATCAAACGGGTTTCATTAAAGGGTGACAACTGTTTTCCAATGTACGACGGCTTTTGAAAATGATACTGTCTCCTATCTCCCCAGACCCCCAAAAAGTTGTTTCTCTTGATGCGGAGAAGGCTTTCGACCGGGTGGAGTGTGATTATTTATTTAAGATTTTGAGAAGATTTGGTTTTGGGTCCAATTTCATCTCATGGATAcgtctgctctattctgctcctACGACTAGTGTACACACAAACTTGCAACATTCAAAATACTGACCCCTCTCCAGAGGGACCCATCAAGGGTGCCCTATGTCCCCGATCCTTTTTGCTCTTGCGATAGAACCACATTCCTTGGCCTTAAATTTATCACCATCATTCACTGGAATCCACCGAGCTGGTGAAAAGCACAAAGTGTCACTGTATGCAGATGATCTactattatatacagttgaagtcggaggtttacatacacttaggttagagtcattaaaactcgtttttcaaccacttcacaaatttcttgttaacaaagtataggtttggcaagtcggttaggacaacaacaaaaaattgcacaagtaaaaatattttttacttgtgcatgacacaagtaatttttccagcaattgtttacagacagattatttaacttataatttactgtatcacaattccagtgggtcagaagtttacatacactaagttgactgtgcctttaaccagcttggaaaattccagaaaattatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacttgtggatgtatttcaaggcctaccttcacactcagtgcctctttgcttgacatcatgggaaaatcaaaaggaatcagccaagacctcagaaaaaaattgtagacctccaccacaagtctggttcatccttggaagcaatttcctaATACCTGAagataccacattcatctgtacaaacaatagtgcgcaagtatgaacaccatgggaccacgcatccatcataccgctcaggaaggatactgactaatcagaatactataaTGTTACCgaatatgtactaatcagaatactattattttactgtatatgtatgaattttctttttaatcttagtactgaatataatgtgtgtaaatataatcaagaaatagaacaatgactgtctgtaccATGGTAGAAATTAATGAACTTATAGCCAGTCTGGCTAGAAGGCTTATCTACACAAACTGACCTTGGCTCAGTCATATATTATCTTAATAGGGAGAGACATGtgagaaccatacagccattgTACTAGAGAGGAGATGACACGGGCTAGTActgaaactaatgacgtcattttcagtttataacctgtggtaaaatgtgtaatgagcagtactctcgtgaataaaagCTGCTGgttgactttaagactgggctctgtccattttattcaaataagggtcatacaaatccttatgaattgacagagtgtttaatttgaattgggtattaaaacagaggaatttaattcctgcaacagatacacgttctgtctcctagagatgaccgTACTTTGCTGcgaatcaatcccaaaacaacagcaaaggaccttgtgaagatgcttgtcGAAACAGgtacaagtcctatatcgacataacctgaaaggccgctcagcacggaagaagccactgctctaataccgccataaaaaaggcagactacggtttgcaactgcacatggggacaaagatcatactttttggagaaatgtcctctggtctgatgaaacaaaaataggactgtttggccataatgaccattgttatgtttggagggaaaaggaggaggattgcaagccgaaaaacaccatcccaattgtgaagcacaggggtggcagcatcatgttgtgggggtgctttgctgcaggaggggctagCGCactttcacaaaatagatggcatcatgaggccggaaaattatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcgaaaaggcttaaggacaacagagtcaaggtattggagtggccatcacaaagccctgacctcattcccatagaaaatgtgtgggcagatctgaaaaagcgtgtgcgagcaaggaggcctacaaacctgactcaccaaacttattatgggaagattgtggaaggctacctgaaacgtttgaccgaagttaaacaataaCATGTtgtgatattttttatttttgtgtatgtgtacatgtgtgcatatttatatattatttccaatcgtaaatgtattttatttttgtatttatgcTGCTTTTGTTGTTAAAGGGAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974790.1 False 5274 mRNA 0.43 5 57598546 57609026
TU315274 True 2985 lncRNA 0.40 3 57595333 57607020

Neighbor

gene id symbol gene type direction distance location
LOC118964377 NA coding downstream 116826 57481596 ~ 57481720 (-)
LOC110520281 LOC106586425 coding downstream 171202 57416082 ~ 57427344 (-)
LOC110505369 LOC106586424 coding downstream 184232 57409981 ~ 57414314 (-)
LOC118963713 NA coding downstream 262248 57332568 ~ 57336298 (-)
LOC110520278 LOC106586422 coding downstream 268150 57321238 ~ 57330396 (-)
LOC110520285 LOC106586430 coding upstream 23114 57632140 ~ 57734917 (-)
LOC110520286 LOC106586431 coding upstream 300581 57909607 ~ 57919306 (-)
si:dkey-3d4.3 LOC106586432 coding upstream 325044 57934070 ~ 57943312 (-)
LOC118964362 NA coding upstream 893531 58502557 ~ 58502699 (-)
LOC110520288 LOC106586437 coding upstream 1134875 58743901 ~ 58761841 (-)
G277808 NA non-coding downstream 6553 57591700 ~ 57591993 (-)
G277807 NA non-coding downstream 6998 57591292 ~ 57591548 (-)
G277750 NA non-coding downstream 7308 57590678 ~ 57591238 (-)
G277803 NA non-coding downstream 20190 57577973 ~ 57578356 (-)
G277801 NA non-coding downstream 21512 57576828 ~ 57577034 (-)
G277966 NA non-coding upstream 175522 57784548 ~ 57784824 (-)
G277968 NA non-coding upstream 176406 57785432 ~ 57785661 (-)
G277974 NA non-coding upstream 180789 57789815 ~ 57790145 (-)
G278220 NA non-coding upstream 326239 57935265 ~ 57988629 (-)
G277749 LOC106586429 other downstream 9363 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 194971 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 300784 57270782 ~ 57297762 (-)
G275250 NA other downstream 2187059 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 2479334 55068639 ~ 55122013 (-)
G284018 NA other upstream 5105549 62714575 ~ 62715177 (-)
G286522 NA other upstream 7360523 64969549 ~ 64970755 (-)
G286580 marco other upstream 7405233 65014259 ~ 65029736 (-)
G286638 NA other upstream 7445674 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 7626154 65235180 ~ 65235908 (-)

Expression


Co-expression Network