LOC110520285 (LOC106586430)


Basic Information

Item Value
gene id LOC110520285
gene name LOC106586430
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57632140 ~ 57734917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597475.2
gggagcagggaggaggtgagggggtgagagtagagggggagagaaagaggggatcgGATTGAAAACAGATCAGCCTGAAGATCTCACCACCGCATGTCTAGAACAACTGTCGATTAAAATCGAGTCTTTCAGCGAAAACACGCAATGCGCTTTCACATGAAAAAACGCAAAATGGAGTGAGAAATTTACTGCTTGAAGATGATGGATTGTAAAAGTTAGATGCGAGTATAAATGCGCCCCTCCGAATTAAATTAGTTATCTGAGGAATGCAGTGCCCGTAATTTCGAGTAGGATTTCAAACTTTTCTTGAAGTGCACCTCAATGGACTTTTTTCAAAGGGACATATCCTGTCCAAGCGGTTTTGATTGAAAAAGTAGTTTCAGTACTATAGTTCCCGGATTCTTTGCGGAGAATCATCGGACAAAGTGAACAAGAGGTCTAAATAAATCATTCAAGgtCGACTCTCTAGGTCGACTCTCTGACTCCCTGCTGTCCACCATGGAGACCTCTGCTCCGACAGCCACTGAGAAAAAGGAGCATAAGGGATCGGGTCTAGATGGAAGCAGCTTCTCAGACCTGCCAAAGAAACCATCTCCCACTACTGTGACCAGAGGTCCTCACCATCTCTTCCCCACGTTTCACACACCGATCCCAATCGATATGCGTCACCACGAGGGGAGGTACCATTACGAGCCACATCCCCTCCACGCCATGCATGGacATCATGGCCTAGCAGGCAGCCCGGTCATCTCAGACGGCATCTCTCTGATCCGTCTGTCCCCCCACGCAGCAGGGACGGGGGATTCCCCCTTCAGCCCCCCTCACTCCTACGTCCACCCCCAGATGGAGCACTACCTCCGCTCCATGCACAGCAGCCCCACCCTCTCCATGATCTCTGCTGCCCGCGGACTCAGCCCTGCAgaagTGACCCATGAGCACCTGAAGGAGCATGGTCTGTTCAGcctgccccctccacctccaGGTGCCAACCCTACAGATTACTACCACCTCATGGCCAGTGGCAGGAGCACTTACGGAGACCTCATCATGCAGACCGGGGCGGccgcagcagcagcagccgcagCAGCACACCTGCCCGACTACATCAGCCCTGTGGATGTGTCCCGGTTCTCCAGCCCCAGACTGACCCCCAGGCTGAACAGAAAGCGagccctgtccatctcccctctctcagaCGCCAGCATCGACCTGCAGACCATGATCCGTACCTCGCCCAACTCCCTCGTGGCCTACATTAACAACTCACGCTCCAGCTCTGCAGCCAGCAGCTCCTACGGACACCTGTCCGTCAGCGGCATCAGTCCGTCGTTCACCTTCCCCCACCCCATCAACCCCATGGCCTACCAGCAGCTGCTCAACCAGCAGAGAGGCCTGAGTGCGTTCGGCCATACTCCTCCCCTTATCCAGCCCTCGCCCTCCTTCGCTGCCCGCCAGCATGCCCACGCCTTGGCAGCCTCCACCCTCAACACCACCCACAACACCTCCAGCTCTGAGTCCAACCAGAATGCTGGTGGTGACCCGGCGGTGAGCAGCACAGTCAACCCCATGATCACCAAGAGGCACAAGGtcaagacagaagcagaaggacCCCGGCCCATATCACCATGCTTTCAGGAGCATGTCCTGGACCTGAGTGAGGAGCTGGACAAAGATGAGTGTAAGCAGGAGCCAGAGGCTGTCTACGAGACCAACTGTCACTGGATCGGCTGCAGCAAGGAGTACGACACCCAGGACCAGCTCGTTCATCATATCAACAATGACCACATCCATGGGGAGAAGAAGGAATTTGTGTGTCGCTGGGATGAGTGCTCGCGGGAACAGAAGCCCTTCAAGGCTCAGTACATGCTGGTGGTCCATATGAggagacacactggagagaagccacACAAATGCACAttTGAAGGATGCTGTAAGGCCTACTCTCGCCTGGAGAACCTGAAGACCCATCTGAGgtctcacacaggggagaagccttacgtCTGTGAACACGAGGGCTGCAACAAAGCCTTCTCCAACGCCTCAGACAGAGCCAAGCACCAGAACAGAACTCACTCCAATGAGAAACCCTACATCTGTAAGATCCCTGGGTGCACTAAGCGCTACACAGACCCCAGCTCTCTCAGGAAGCATGTGAAGACGGTCCACGGACCTGAGGCCCACGTCACGAAGAAACAACGTGGCGATGTGCCCCCCAGGGGTCCTCCTAAGGGGAATGGAGAGAACGAGGCAAACGCCAAACAGAGtcgtagagggatggatggaaaaaTGGAGGCCAACAGCACCATTAGAGGAGCAGAGGACTGCCTGCAGGTCAAGTCAATCAAGACTGAGAACTCAATAaCGTATCAATCCAGCCCGGGCGGTCACTCGTCATGTAGCAGTGAGCCGTCGCCACTTGGCAGTGCCCACAACAATGACAGTGGAGTAGAGATGGCCCTGCACAGTGGGGGCAGCTTTGGGGACCTGAGTGCACTGGATGACCCTCCCATGGTggactcctctaccctctccccccGCAACTCGGTGGGGGTGGGTCTTGGGCTTCATAAAGGGGGAGGAGTCACTATCAAGCTGGAGAACATCAAGAAGGAGAGGCTCAAGAATGTGAGGGACTCTTGTCCCTGGGCCAACTCTGGTCCTCAGGCACCTCAGGTCCGAAACACCAAGCTGCCTCCCATTCCTGCTGTTGGTTCCCTTCTGGAAAACTCTAATATGATCGCTCCACCCGGGCTCTACCCTGGTCAGCGTCTTGGTGACCTGTCATCATGCGAGGTGACCATGCTGAACCAGCTAAACGAACAGGGCCGCCGGGACAGCAACACCAGCACTGCCAGCTCAGCCTACATCAGCCGGCGCTCCTCTGGCATCTCCCCTTGCTACTCCAGCCGCCGCTCCTCCGAAGCCTCGCAGTTCAGCAACCGCCACAACAACATCAGCTCAGCCGACTCCTACGAccccatctccacagacctgTCCCGTAGATCCAGCGAGGCCAGccagtgtggaggtggaggtggaaacCTCTCTAGTTTGCTCAGCCTCACTCCTGCCCAGCACTACCATCTCAAGGCCAAGTATGCTGCTGCAACCGGGGGAGCTCCACCTACACCTCTGCCCAACATGGAGCGTATGAGCCTCAGGACCAGGATGGCCCTGTACGGGGACCACTCCCAGGAAAGAGAGAGCTTATCCCACTCTCAACTGTTCCACCCACCTACCGCAGCCGTTCCCAGACGCTGTAGCGACATCGGCTATGGTAGCCATAGCATGATGCCCCACGAGGTCCCTGGGAACCTTCCCCGGCGAGCCAGCGACCCCGTCCGCAGAcctaccctagacccactatCCCTTCCACGAGTCCAACGCTACAACAGCATGAACAGTATGAACCCCAACAGTATGATGCCTCCTCCCTCTGCCGACCGCCGGGGCCTGGCCATGCAGAGCTACACGCGATCCGACGGAAGCCTGCACCACCACCCCTTCGCCCCACGGCCCCCCAGCATCTCAGAGAACGTGGTGATGGAGACCATGGCCGTGGACGGGCTGGACCATGCAGGAGATGAGGACATGGTGCTGCCTGATGATGTCGTACAGTACCTCAGGTCTCAGAACACTGGCCCTGGCCAATCAGCAGGCCCCGCCAACTACGCCAACAGCCAATCACAAGGCGGCTTCCAGGTCCAGGGGAATATGACCTCCTCCCAACAGCAGTTCTATGGGCAGAGGAGGATGGCCATGGTGGATGCCAACATGCCCCTGTCTGGGTCAAGCCAGGTTCCCCTACCCCCCTACCAGATGAGCCCTGGGTCTGGctcccagcagcagcagtacccaGCCTCTCACAGTAGGAACAACAAGAACAACATGCCAGTCCAGTGGAACGAGGTCAGCTCAGGGACTGTGGATGCTACAGCCACCTCCAGACTCACCAAGCAGAACCTCCTCAGAAACAACAACCTGGCCATGGTCCAGCAGAGACAGAACTTTGGGCATTTCCAGGGTAGAATGGGTAGTAACAGTAACCAGCAGGTGATGCCCATGAGCCAGAATATGGCGCTACAAGGCTACACCCAGAGAAGCAACTCCCAGTGGATCAACTCTGTCCAACAGCAACAAAGGCAGCCATGCAGCATGAACTATCCTGAGCAGATGAGTCCCCAGCAGGGATATGGCCAAGAGATCATCCCTGTTCCTAACTCTGGATCTGGGAATGGCAGCTTTCGACCCAACTTTAATGGCATGGCACTGCCCAACGGCAGGGTGATGgctacacacaacaatcctgatACGCAGATCTACAGGTCAAGGACTCCGGTTGAAAGCTATGCCCCCCACATGATTCAGGTTgaccagcagaactacagtattTCTTCTCAGCAGCAAGACGTCAAtactgggaacagagctgggatgCAGCCCAGGCCTCCCATGGAGCCCAAGTCTATGAGCAGTAGACAACACTCAGGGTCCAGAGGTATGATGCAGCAGAACCGTTTCCCTCAGTCTGACTTGCATCACAACACCTCTGAGGCCAGTCCAAAGAGACCGGGTAGCACCGCAGCACATACCGGCGGACATAACAGAGACTCAAACTCCAATGCTTCAATGTTTTATGCTGGCCAGATCCAGATGTTTGAACCCAATAACAACCACAATGTGAGCTTCAACTCCCCCATGTCCCCCGTTATGGGCCAGACACCGGGAGGCACCACTGTTACCATGGCATCTCCAGGGGTCAACCAGGTCACCAGCACCGTTGACTCATCCGGCTCCTCTGGATCGATCTCTGGCGTGGAGCATGCCCAGATCGACTTTGACGCCATGTTGGATGATGGAGACCACTCCAGCCTGATGTCAGGGACCCTCAGCCCCGGACTCCTCACCAGCCTGTCCCAGAATTCCTCGAGGCTTACCACCCCCCGTAACTCTGTGACCCTGGCCTCTGTGCCAGCAGGGATCGGTAATATGGCCATCGGAGACATGAGCTCCATGTTGACCACCCTGGCTGAGGAGAGCAAGTTCCTCAACATGATGAGCTAAGGCCTTGGCTGTGTCACaataatctctcctttctcccgaactgtgcacttgttcacttcccttcttgtatttgaaagaaaatataTCGCATCTCCCTCTAGCCTAGCCCATGCCCCACTAATCCAATGCTTTAATTTTgtggggaggagggaaagagtgCACACTTTGGAAGGAAAGAAAGATTATTGGGATGCCCCATTGTGTATTCAGACCATTTCAAGGAAAATGTACTATAAAAGCACTGATTATATGTAACAATACCCTATGGAAATAGTTACTCTTCAGGAGCATGTCAATCTCCGCTGGCCTGCATAGAGACTTTGCTTATCCAGTAATATGTCATATTTGCTCAAGTACATTTTAAGTAGTGTTTGTGTTGAGAAAGTAAGTATAGTAAAGACATAAGGAACATTTTAAAGACATAAGGAGCATTATCACTGTTTTGAAAAGCCATACTTTGTATCTACGAATAAGAATAGACAAGAGTATAAAACTACATCAGCAAATATGTGTCCATTGCTCCGTATTTGTTGATGTTTGTTACTCTTTAAAAAGCAGTGCACTGATAGCAGTTCACGAAGTGCCTTGCTAAATAGATTATGTTTGAATAATATGTGAATTCATGAAACATACATACATGTAACGATGTTGCCAGGTAAAAAGGCATGAGGAAATATTAGAATCATTTTCTTATTACGACCTTTGATCATGTTTATAGATATACTGTATGGTACGTGCTTTAAATTATGTTAAAGAGACTTGATTATTTCAAGTACAATATGATGCAACTATAGAACATTGTGATGCTACATTGTTAACATCCATCCATGTATAGAGGAGCTTGCAGTGGAACAGGATCCCATGCAAAGCTAGAGACGGTTTTCGTGGACCCAGATTAAGCCTAATGAAGGACTAAAAACCATGCTGAGTGGAGATTCTCATTTGAAAGTGAtgtttagtccaggactatgCTTAATCTGTGTATATGAAACCAGCCCCTAGTGTGGAGGAGATGGCCACTTGTCATACTGTATAAAATATCTTCCAAGTGCCCTCCAGAAGCTGTACAGTAACCCTCCAAGGACTCTCCTCTTTGTGAGACTGACTGTATGATAAAAAAGGACAGAGATCTGCCTCAGTGTAAATCAGTCTGTGGAGACACACGctaacctggactcaggggtagacgtagcATAGTAAATCTAAATACGGGACACTCctattagtatgatatgttatgtattaatttgtggatgcccatcatccatttcggatggtatgttatgaattacaatccgtatgatatgttacaaaatGCATTTCTTACAATATTTAACAAATAGCAATTTGttcaatatgttacaaatttgcaaaacgtatgatatgttacgaattccaatttgttgtgattagcttggtggtaaggtggctaatgctaatgttagctgggTGGCCAATGTTTGCTAGACTAGGTGTTAAGGTTAGCAGTTGGATTAAAGGATTaggattaggggaagggttagctaacatgctaagtagctaAAAGTAGTAGGTAGTTGCAAAGTTGCCACAATGCTAAAGTTGTGAGATTCGAACACTCAACCTTTGGGTTTCTAAACGTTTGTGTTATACgcctacccatccaccctgaccaaccgcCCTACTTtaatttttgccttaagtaactgTCTCTCTTATGTAACCAATCCAAACTTAACATATCCTAATTTGAGTATTCCTGATTTACGTTTAcaatgttacatctagtctattaGACCAGGCTGTGCACACATACCCTGTGCCTGTCTAGGATGTATCAGATCTCTGAAGGAATATGCTAGTACTCCATGTGTACTCGGTGGACATGATTACACACTAATTTGTGGATTCATTACCCCTCCCTACCCCCTGGGCTAGACATGGACTGTATGGAGAATCAAATAAGGGATGAATTACTTTGATTACAAATCATATCAAGAACAATGATACACCGCAACCTCCTCAGTTTTTATTTTAGTTTGCTTGCTGGAATTAAAGTAGCCTTACCGTA
>TU315332
AACGCCAAACAGAGtcgtagagggatggatggaaaaaTGGAGGCCAACAGCACCATTAGAGGAGCAGAGGACTGCCTGCAGGTCAAGTCAATCAAGACTGAGAACTCAATAaCGTATCAATCCAGCCCGGGCGGTCACTCGTCATGTAGCAGTGAGCCGTCGCCACTTGGCAGTGCCCACAACAATGACAGTGGAGTAGAGA

Function

NR:

description
zinc finger protein GLI2-like

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0043009 chordate embryonic development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0050789 regulation of biological process biological_process
GO:0021984 adenohypophysis development biological_process
GO:0007411 axon guidance biological_process
GO:0044464 obsolete cell part cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597475.2 False 7114 mRNA 0.51 14 57632140 57734917
TU315332 True 202 lncRNA 0.52 2 57638397 57641789

Neighbor

gene id symbol gene type direction distance location
LOC110520284 LOC106586429 coding downstream 23114 57595333 ~ 57609026 (-)
LOC118964377 NA coding downstream 150420 57481596 ~ 57481720 (-)
LOC110520281 LOC106586425 coding downstream 204796 57416082 ~ 57427344 (-)
LOC110505369 LOC106586424 coding downstream 217826 57409981 ~ 57414314 (-)
LOC118963713 NA coding downstream 295842 57332568 ~ 57336298 (-)
LOC110520286 LOC106586431 coding upstream 174690 57909607 ~ 57919306 (-)
si:dkey-3d4.3 LOC106586432 coding upstream 199153 57934070 ~ 57943312 (-)
LOC118964362 NA coding upstream 767640 58502557 ~ 58502699 (-)
LOC110520288 LOC106586437 coding upstream 1008984 58743901 ~ 58761841 (-)
LOC110520289 LOC106586438 coding upstream 1031510 58766427 ~ 58774628 (-)
G277808 NA non-coding downstream 40147 57591700 ~ 57591993 (-)
G277807 NA non-coding downstream 40592 57591292 ~ 57591548 (-)
G277750 NA non-coding downstream 40902 57590678 ~ 57591238 (-)
G277803 NA non-coding downstream 53784 57577973 ~ 57578356 (-)
G277966 NA non-coding upstream 49631 57784548 ~ 57784824 (-)
G277968 NA non-coding upstream 50515 57785432 ~ 57785661 (-)
G277974 NA non-coding upstream 54898 57789815 ~ 57790145 (-)
G278220 NA non-coding upstream 200348 57935265 ~ 57988629 (-)
G278797 NA non-coding upstream 591555 58326472 ~ 58327641 (-)
G277749 LOC106586429 other downstream 42957 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 228565 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 334378 57270782 ~ 57297762 (-)
G275250 NA other downstream 2220653 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 2512928 55068639 ~ 55122013 (-)
G284018 NA other upstream 4979658 62714575 ~ 62715177 (-)
G286522 NA other upstream 7234632 64969549 ~ 64970755 (-)
G286580 marco other upstream 7279342 65014259 ~ 65029736 (-)
G286638 NA other upstream 7319783 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 7500263 65235180 ~ 65235908 (-)

Expression


Co-expression Network