LOC110520357 (asmt)


Basic Information

Item Value
gene id LOC110520357
gene name asmt
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62832908 ~ 62841097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597618.2
ctaTGGGCTATCCGATTAAACTTGAGACTGAGGCAGCAGTGGTCATTAATATTACTCCCTCAGTCGTTTGCACAGCCACACGTTTACAAGAGCTATTGGCTGTTTCACTACAACACACACGAGgactagcagcagtagcagaACCAGGATCGACTTGGGACCAACTCATACAGGATACACTACTAAAGGACTCATACCGATCTCCTTTGACAACAGGAGGCCTCGCAGGAACACTCAGTCTCATACAGCGACAGACACAAACCTACGCTGGTCAAGCAGAAGTGTCTAGTGAGAGGCTGAGGGACCAGGGAAGACTTTTCTAATGGAGCCAGCTGGTACTACTacttctgttactactgctgctgactaCCCCCGGAAGATTCTGGACTATATGGAAGGCTTCCTGGTCTCTAAGACCCTGTTCACAGCCTGTGAGCTGGGTGTGTTTGACCTGCTGGCCTCGTCACAGCACCCCCTGTCTCTAGAGGAGGTAGCACTGGGAATCAGGGCCAGCCAGGACGGGACTGAGAGGCTCCTGGCAGCCTGCACCGGGCTGGACCtactcaatacacacacactggaaggacaggtgATGTACAGTAACACAGAGCAGTCCAGTGTGTATCTgacccagtccagtccagtgtccCTGACCCAGTCCATCCACTACAGCTCCAAGACCATCTACCTCTGCTGGCATTACCTGACTGACGCTGTGAGGGAGGGCAGTAATCAGTATGAGAAGGCGTTTGGTGTCAAATCTGAACATCTGTTTGAAGCCCTGTACAGgtctgagGAGGAGATGGTAAAGTTTATGCAGCTGATGAACTCCATCTGGAACATCTGTGGTCGAGACGTGGTGACGGCCTTCAACCTCTCACCTTTCACAACCATCTACGACCTCGGGGgttGCAGTGGAGCGCTAGCCAAGCAGTGTGTGTTGGCATACCCAGAATGCACTGTGACAATCTTTGACCTCCCCAAGGTGGTGAAGACATCCAGAGAACACTTTGTTACCGACGACAACCAGAGGGTCAGCTTCCATGAAGgggaCTTTTTCAAAGATGCACTGCCAGATGCTGACCTCTATATTCTGGCGAGAATCCTTCATGACTGGACAGACGTGCGCAGCATAGAACTACTGACCAAAGTCTACAGGGCTTGcagaccaggaggaggTGTGTTGGTGGTAGAGGCGTTGCTGTGTGAAGACGGGTCAGGGCCTCTGACAGCCCAGCTGTACTCTCTGAACATGCTGGTGCAGACGGAGGGGAAAGAGCGGACGGCAGCAGAGTACACTGCCCTGCTGACAGCCGCAGGGTTTCAAAACATACAGGTGGAGAGGACAGGCAAGATTTATGATGCTGTCCTGGGACGCAAGTAGAGAAGTCTCTATATCTACTGTTGATGTTGCTGATGTACAGATCtgctatcttaatttgatcactctgttgtcgCAAAGATTTTTCAAAATGCATTTTGCAATGTATTCAACGTTTGAAAAGGCTTCTTAAGTTTGAAATTTCCACTacaaaatgtcagacttgattaaCGGAAAAtgaatcaacccctacaaaaatatagatgaattacaatctacataataattcacatttcccgtTGCTGGAGGTTTATTATTAACTGGGTCAAATTAAATGATAGACCGTTATTATCTCTGTAGACCTGTCTATCTCTGTAGCCTAGGTAGTAAACCTATTGTCTTTGTAATCTTTATTTGAATGTTAAAACCTTTGTTCTTCTGATATGATAGACTATTTACCCATtaaaaatgtgttgttctacAGTCAA

Function

symbol description
asmt Predicted to enable acetylserotonin O-methyltransferase activity. Predicted to be involved in melatonin biosynthetic process and methylation. Is expressed in brain and ovary. Orthologous to human ASMT (acetylserotonin O-methyltransferase).

NR:

description
acetylserotonin O-methyltransferase

GO: NA

KEGG:

id description
K00543 ASMT; acetylserotonin O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597618.2 True 1809 mRNA 0.48 8 62832908 62841097

Neighbor

gene id symbol gene type direction distance location
LOC110520353 LOC106586507 coding downstream 52596 62748424 ~ 62780312 (-)
LOC110520350 LOC106586501 coding downstream 237209 62547867 ~ 62595699 (-)
trnal-caa-2 NA coding downstream 289579 62543221 ~ 62543329 (-)
trnal-caa NA coding downstream 290210 62542589 ~ 62542698 (-)
LOC110520347 lrch1 coding downstream 299601 62425684 ~ 62533307 (-)
LOC110520356 LOC106586509 coding upstream 363 62841460 ~ 62853914 (-)
LOC110520358 LOC106586406 coding upstream 14782 62855879 ~ 62858995 (-)
LOC110504409 sh3rf3 coding upstream 28651 62869748 ~ 62943518 (-)
LOC110520360 LOC106586512 coding upstream 170037 63011134 ~ 63025281 (-)
LOC110520361 LOC106586409 coding upstream 187781 63028878 ~ 63056733 (-)
G284040 NA non-coding downstream 89978 62742521 ~ 62742930 (-)
G284023 NA non-coding downstream 106863 62725021 ~ 62726045 (-)
G284012 LOC106586506 non-coding downstream 128806 62703779 ~ 62704102 (-)
G283998 NA non-coding downstream 162508 62670174 ~ 62670400 (-)
G283992 NA non-coding downstream 177142 62655557 ~ 62655766 (-)
G284213 NA non-coding upstream 13486 62854583 ~ 62854787 (-)
G284217 NA non-coding upstream 21656 62862753 ~ 62864090 (-)
G284218 NA non-coding upstream 25240 62866337 ~ 62868740 (-)
G284220 NA non-coding upstream 27725 62868822 ~ 62869461 (-)
G284244 NA non-coding upstream 61219 62902316 ~ 62903140 (-)
G284018 NA other downstream 117731 62714575 ~ 62715177 (-)
G277749 LOC106586429 other downstream 5243725 57584386 ~ 57589183 (-)
G277673 LOC106586423 other downstream 5429333 57402984 ~ 57403575 (-)
si:dkey-91i10.3 LOC106586420 other downstream 5535146 57270782 ~ 57297762 (-)
G275250 NA other downstream 7421421 55410143 ~ 55411487 (-)
G286522 NA other upstream 2128452 64969549 ~ 64970755 (-)
G286580 marco other upstream 2173162 65014259 ~ 65029736 (-)
G286638 NA other upstream 2213603 65054700 ~ 65075985 (-)
G286953 LOC107579696 other upstream 2394083 65235180 ~ 65235908 (-)
G286985 LOC106586592 other upstream 2457110 65298207 ~ 65300417 (-)

Expression


Co-expression Network