XLOC_021709 (r3hdml)


Basic Information

Item Value
gene id XLOC_021709
gene name r3hdml
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 25821055 ~ 25827370 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043084
GACGTTGTTTGCAAAGGCCAGAGTTTAAGTGGAGATCTTTTGAGCTGCTCTTCTCCAGGCTGTGCTGAAGTGCTGTGAAGACAACTGAGGACCCCCACTCTCTTCAGACTGCATTCACAGCTAAAGCACCTGTTGGCGGGCAGACAGAAGACAGGAGGATGAATTTAGTATGCGCTCAGCTAGTTTTTGCTGTCACCTTGTGGACAGCAGGAGCAGAAGCAGGAATAGTGGCGGTGTGCAGCGGGACATCTCTGCTTCAGGCCGAACAGCTCTCCATGGAGGCCGAAGTGAGGAACAGCAGCGACGGCAGCACATTTCGAGTCCGACGGAGACGCTTCATCTCCGGCAAAGATATGACGGCTCTATTGGACTACCACAACCGCGTGCGCTCACAGGTCTTCCCGCCGGCGGCAAACATGGAATATATGGTGTGGGATGAAAGACTGGCCAAATCTGCAGAGTTTTGGGCCTCTCAGTGCATATGGGAACACGGGCCACATCATTTTTTGCAACACATTGGACAGAACCTGTCGATTATCTCTGGAAGataCAAGTCGATTATTGATCTGGTAAAATCCTGGTATGATGAGAGACACTCTTTTTCTTACCCCAGTAGATGCAGTGGCTCCGTATGCACACACTACACACAGATGGTGTGGGCCGCAAGCAATAAGATCGGGTGCGCTATCAAAAAGTGTTCAGACATCTTTGTTTTTGGGAGTATGTGGAAACAAGCCACCTTACTGGTTTGCAACTATGCTATCAAGGGAAACTGGGTCGGAGAAGCTCCATATAAAATAGGAAGACCCTGCTCTGCGTGTCCCTCCAGTTATGGAGGATCATGCAATAAAAACCAGTGTGACTCCAGACCAAAATCCCGAAGAAACACAAATGGCTTTAGAGGCTAtaagcaataaaaacaaatatctttaattaaagaacatattttaaaaatgtaataaaactctTCAATAATAGAAACCACTAAAATGTCTATTTCACAAtcttttcatttgaaaaaaaaaaggaatgacattaaaataaaatatcgaATTGATCAAATGTTTGAATGCCGAAATGTATTTCCTGTTGTTGTGTTGATTATAACTTCATAGTACTTTGTATTTTTTAAGTtgtatgttattatttgttgttttttcaggCTCTTTGCACTGTTTTATCATTTGATTGTACTAAGTTGCATCGCAGCGACAATTCACATTGAAAGTTAAGcactttcttttattattatcgtTTTGTTCTTTTTGTACTGGTAATAAATCTTCTTTTGATG
>TCONS_00043085
ATGAATTTAGTATGCGCTCAGCTAGTTTTTGCTGTCACCTTGTGGACAGCAGGAGCAGAAGCAGGAATAGTGGCGGTGTGCAGCGGGACATCTCTGCTTCAGGCCGAACAGCTCTCCATGGAGGCCGAAGTGAGGAACAGCAGCGACGGCAGCACATTTCGAGTCCGACGGAGACGCTTCATCTCCGGCAAAGATATGACGGCTCTATTGGACTACCACAACCGCGTGCGCTCACAGGTCTTCCCGCCGGCGGCAAACATGGAATATATGGTGTGGGATGAAAGACTGGCCAAATCTGCAGAGTTTTGGGCCTCTCAGTGCATATGGGAACACGGGCCACATCATTTTTTGCAACACATTGGACAGAACCTGTCGATTATCTCTGGAAGataCAAGTCGATTATTGATCTGGTAAAATCCTGGTATGATGAGAGACACTCTTTTTCTTACCCCAGTAGATGCAGTGGCTCCGTATGCACACACTACACACAGATGGTGTGGGCCGCAAGCAATAAGATCGGGTGCGCTATCAAAAAGTGTTCAGACATCTTTGTTTTTGGGAGTATGTGGAAACAAGCCACCTTACTGGTTTGCAACTATGCTATCAAGGGAAACTGGGTCGGAGAAGCTCCATATAAAATAGGAAGACCCTGCTCTGCGTGTCCCTCCAGTTATGGAGGATCATGCAATAAAAACCAGTGTGACTCCAGACCAAAATCCCGAAGAAACACAAATGGCTTTAGAGGCTAtaagcaataa

Function

symbol description
r3hdml Predicted to be active in extracellular space. Orthologous to human R3HDML (R3H domain containing like).

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-275 Predicted to be active in extracellular space. Orthologous to human R3HDML (R3H domain containing like).

Ensembl:

ensembl_id ENSDARG00000030650

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043084 False 1294 mRNA 0.42 6 25821055 25827370
TCONS_00043085 True 759 mRNA 0.49 5 25822742 25826993

Neighbor

gene id symbol gene type direction distance location
XLOC_021708 rbms2b coding upstream 52290 25708787 ~ 25768765 (+)
XLOC_021707 fmnl3 coding upstream 372183 25354856 ~ 25448872 (+)
XLOC_021706 esyt1a coding upstream 480985 25308018 ~ 25340070 (+)
XLOC_021705 si:dkey-151g10.6 coding upstream 514452 25305431 ~ 25306603 (+)
XLOC_021704 pa2g4b coding upstream 519580 25291891 ~ 25301475 (+)
XLOC_021710 hnf4a coding downstream 5319 25832689 ~ 25865856 (+)
XLOC_021711 ttpal coding downstream 41267 25868637 ~ 25874877 (+)
XLOC_021712 pkig coding downstream 51950 25879320 ~ 25942859 (+)
XLOC_021713 ccn5 coding downstream 166316 25993686 ~ 26003858 (+)
XLOC_021714 AL845287.1 coding downstream 167657 25995027 ~ 25995141 (+)
XLOC_021691 BX957326.2 non-coding upstream 1260182 24556455 ~ 24560873 (+)
XLOC_021689 NA non-coding upstream 1329018 24483312 ~ 24492037 (+)
XLOC_021687 CR925709.3 non-coding upstream 1672284 24148055 ~ 24148771 (+)
XLOC_021686 NA non-coding upstream 1680645 24133781 ~ 24140410 (+)
XLOC_021683 dre-mir-7149 non-coding upstream 1746900 24074083 ~ 24074155 (+)
XLOC_021722 NA non-coding downstream 763754 26591124 ~ 26625133 (+)
XLOC_021724 CT573349.1 non-coding downstream 1101373 26928743 ~ 26928858 (+)
XLOC_021731 NA non-coding downstream 1681497 27508867 ~ 27516273 (+)
XLOC_021738 NA non-coding downstream 2043369 27870739 ~ 27872705 (+)

Expression


Co-expression Network