LOC110520420 (trim45)


Basic Information

Item Value
gene id LOC110520420
gene name trim45
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65973480 ~ 65978709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597733.2
GCTGAGTTGAGGGGCCTGGACGTCGTTTAGTTCTCTGCTTCAGATCGCGAACAACTTCAAACCACGCCTGGGGGTGCAAAGGCTGTTTTTCATTGGACTGGAGAAGAGGGTTTCATGTTTCAAGGAAGAGAACGTACCTAGTGCGGAGTATTACGGAAGAAAAGTTGAGGGTGTAGGAAACAGCGTAACAATAGTTATAGGCCTATACAGTCCTACACGGAATGTTATTTTGGTGTTACGGTATTATGCTGGGGTTTTCTGTTGCATACTAACGTTAACTGTAACCTAGGCTACTGATATAGTTGCAAATTGGTAGCCTAGGTCGATTTCTGACACCGGTATTTTTTATTCTTAAACAAAATCCGGTAACAAATTGTTTTTAAAGAAACGAGACAATACTATAAAACACAATGTCACACTGTGACCAAATTTTGGAAAAAGATGTGGATTCCTCGCCAAGCGCGACCACAAACTCGAGCTCTAAAAACGGAGATAACGGGGGCGTCGTGATCAATGCGAGGGCAGTGTGCCGCGTTTGTAAATGTTTATATCGCGAGCCTAAAATTATGCAGTGTTTACACACCTTCTGCGCAGACTGCGTTCGTCAACTGGAACCATTTTCGGTGTCTTCGGGAGTACACAATGGTAAAGCGGTCCCTCTGGCAGGCGAGCCGCCCTCTGCCGTCACCGTTCTCTGTCCGGAGTGTGACTCCGAGGTGGATATCCCGTTGTCCGGAGTGGACGGGCTGACCACTGACCACTTGGCCCTGGACGAAGTGTTTCTGGAGACGCTGATGAGCAAGAACTCTGTGGTATGCGACCTGTGCAGCGACGGGGACGCAGAGAAGCGTTGTGAGGTGTGCAGTGTCAACCTGTGTGAGTTTTGTATTCAAGCACACAGGAGACAGAAGAGGACGTCGTCTCACACCGTCCAGTGTCTGGAGGACCTGAAGACCCAGGGTTGTCTCTCTCGGCCCGTCCTGTGCTCCCTCCACCCTGCCCAGGAGCTGCGTCTCTTCTGTGAGCCCTGTGACCTACCTGTCTGCCTGGAGTGTGCCGCCACCTTCCACCGCGACCACCGCTGCCTCCCCACACGTGATGTCATCGATCGCCATGGGGGCCGTATCCGGGATTTGGTTACCGGGCGCCTGCGGCCACGGCTGGACCAGCTGGAGGAGTCACTGCGGAAGGTGGACCTATCCCAGGAGACCTTGCAGACCAGGGTGGATGCGGCGGTGGACGAGGTGCGTTCCTTCGCACGAGGCTATGCTAGCGCTGTGGAATCGCACTGCCTGTTGCTGCTACGGCGCTTAGAGGAGCTGGGTCTGCAGCGCAGGAGTCATCTTCATCTGCAGAGGGCGCAGCTGCAGCAGGCCCTGTCGGACACCCGCAGGGGGGTGGAGTTTGCCGAGCGACTGCTGACGTGCGGGTCGGACGCAGAAATCCTCAGTGCTAAGGACGTGACCCTCCGCAGGCTGGCTGTCCTGATGGAGACGGGTTACAACCCCCCCCCAGAAGCCGTCTGCCCTGATGAAGGGAGCAGTATTTGCTTCCTGCCACAGGAGAGTGCAGGCGAGATGGCGGGGTACCCGATGGTGGGGGTGATCCACACCAAGACCCTGGAGCTCAGCAGGTGCACCATTGAAGGGGAAGGTCTGCAGCGTGGCAGGGAAGGCCAGAGAGGGGAGTTCACCCTGGTGTGTAGAGACTTCGCTGGGGAGCAGATGGGTCGTGGAGGGGAAGCTGTCCTGGTCAGTATGGTCCACAAGGAGAAGAAAGACTGCAGAGTGGAGGCGGCGGTGGTGGATAACAATGATGGCTCCTATTCTGTCTCCTACACCCCCATGGAGCCAGGGCCCtactctgtgtgggtgtgtgtcaagGCCCTACACGTTAAGGGTTCCCCCTTTGTCCTGAATGTGAGGAGACAGGTCCGGTGGCACCGTGGAACGTTCCACTGCTGTTCCTTCTGCTCCAGTGGGGGTTCTAAAGAGGCCCGTTGTGGCTGCATGGGAACCATGCCAGgagGGTTCCAGGGCTGTGGTCACGGCCATAAGGGTCACCCCGGTAAGCCCCACTGGTCGTGCTGTGGAAGTACGGTGGAGGCCTCAGAGTGCCTGCCACAGAGTGTCATAACGGCAGTGGGTGGAACAATAACAGCAGTGGGGGGGACAGGCTCGCCTCGGGGCCACCTTAGGACAGTGGAGCTCTGAGGGACAGGGCCAGGACACCCCTATCCCCACCAGATATCATGGTCTACAAATCAACCCTTTCAGAATTTCTATTTATTTCTATTTTCAAGATGTAGATTTTATACACAAAACAATATTTGTTGTGATCCGCTACTGTAGCTAACTATTCTGTCGTTTCTATTGTTTTGCATGTGCATGTTACATCACAAGACTGATTTAGTGCCTTTCATGTATTTGAAAGACCATTATTTTTATTCTGAAATAAATAACACTGGAATAACTTAA

Function

symbol description
trim45 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in chromatin and nucleoplasm. Orthologous to human TRIM45 (tripartite motif containing 45).

NR:

description
tripartite motif-containing protein 45

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12021 TRIM45; tripartite motif-containing protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597733.2 True 2477 mRNA 0.54 6 65973480 65978709

Neighbor

gene id symbol gene type direction distance location
LOC110520419 man1a2 coding downstream 9767 65853721 ~ 65963713 (-)
LOC110520418 fam46c coding downstream 133002 65821455 ~ 65840478 (-)
LOC110504474 wdr3 coding downstream 196168 65769314 ~ 65777312 (-)
LOC110505400 NA coding downstream 262914 65709604 ~ 65710566 (-)
LOC110504464 NA coding downstream 276069 65696578 ~ 65697411 (-)
LOC110520422 vtcn1 coding upstream 116 65978825 ~ 65984444 (-)
ttf2 ttf2 coding upstream 41324 66020033 ~ 66027601 (-)
rnf17 rnf17 coding upstream 57633 66036342 ~ 66070134 (-)
LOC110520425 LOC106582038 coding upstream 204407 66183116 ~ 66193487 (-)
LOC110520429 LOC106586615 coding upstream 289476 66268185 ~ 66295887 (-)
G287556 gdap2 non-coding downstream 189819 65782911 ~ 65783661 (-)
G287552 NA non-coding downstream 196688 65776565 ~ 65776792 (-)
G287331 NA non-coding downstream 205275 65767995 ~ 65768205 (-)
G287664 NA non-coding upstream 15064 65993773 ~ 65997590 (-)
G287666 NA non-coding upstream 19259 65997968 ~ 66000189 (-)
G287693 NA non-coding upstream 90428 66069137 ~ 66069360 (-)
G287697 NA non-coding upstream 96474 66075183 ~ 66075418 (-)
G287112 NA other downstream 392985 65579791 ~ 65580495 (-)
G287042 NA other downstream 526197 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 673063 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 737572 65235180 ~ 65235908 (-)
G286638 NA other downstream 897495 65054700 ~ 65075985 (-)
G288578 NA other upstream 863962 66842671 ~ 66842881 (-)
G289678 NA other upstream 1648123 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 1905043 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2227881 68206330 ~ 68208674 (-)
G290542 NA other upstream 2600394 68579103 ~ 68580707 (-)

Expression


Co-expression Network