rnf17 (rnf17)


Basic Information

Item Value
gene id rnf17
gene name rnf17
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66036342 ~ 66070134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597738.2
TGCACGGTCCGGCCTTTCCATCTGCTCTTGAGTGCCTTTATGAGCACGTGACATAATTGGAGGCAGAGGACTCAGACAGAACATTCTTTCAATCGATGTGAACCTTAGTCGTCCATTCAAAAATGTCGGACAGATCGCCTCGAGCCGACAACCCGAACTCTGTGGTTTGTAACATATGCGGTATTGCTTACACTTTACCAGAGGACGAAATCGTTGGCAACCTTCCCAATGTCCTCCTGTGTTCCCACATCTTCTGCACTACCTGTCTTCGCTCGTTGGAGTTTAACAATGTCATTCTGTGCCCTGAATgcaagGTTGAGTCCACTCTTCCTGAAGGAGGGGTGGAAGGACTGCAGGTGGACAGCAGAATCATTGGCCTCATCTACACAGCCAAAATGAACAAAATGAAAAGAGACAGACCGAGGCATCACAGAGTCAAATCCTCGTCTTCACTTCTCGAGGAGGACACAAAACAGGGTCCAGATGTAGAGAAAGCACTGAAAGCAGTAGAAGAGGCTCTGTCTCAGGCCTCTGAGAACATGGCCAATCTGGACAACATCCATCAGACTCTGGTGAAAGGCTTGATGgtgcaggtgaagagagagaaggcCAGACTGCTGATGGAGATAGATGAGGCTATGGGTAGGGCTTTCACCATCCTCAATAGAAGGAAGGGGGCACTGGTGGCTGAGCTGACCAACATGGAGCAGCACTTCCCGTCCAGCAGGAGGGAACTGGGccgggtggaggagaggatgagggccCTGGACACAGCCATGCAGAAGGCCAAGCAGGTCGGACAGCACCCCtccctggagagctactgtgACCTGGAGCagTTGTTGGAGACCCTGCAGGCTTCTGTGGATGTACAGTCGTTTGACCTGAAGTGTCTGTCTCTGGGCTCTGGACTGAGctgcaTAGCACAGCAGGATGCGCTGGGCAGGAGTCTGAAGGCGTGTCTGAAGATCAACATTGGGAACGCTAAGATTCTGACAGATGAGCTGATCCACAGAGAGAGGCCCCAGGAGCAGGCTGGGCCCAATAGGAAGGCCCCCCTGCTCCCACACTCCCTTAACACCAGAGAGCCCAGCCgcccccagcagcagcagcaggagagccAAACGATGATGAGGCCTCCCCCGCCCAGCACCAGAGAGCATGTTCCACCTCACCAGGAGCAGGAAAGCCTGAGGATGACTAGGCATACCTGGGGCCCCTCTCCCATCCCTGGCCCTCTGCCCTTACCCAGCTCCAGCCCTGTCTCAGACTCCGGCCCCAACGTCATCATAGAGGAGATTATAGAGGAGATTGAACAAGGAGGAGAAGGGAAGGACGAAGTCGGTTTGAAATCCTGCCATCAAGTCACCACAGCCTCATCCAAAACCACTGCATCAGGGTTCTCAGTTGGAATTGTCCCAGCTCACCTGTCTGAGCTGCAGCAGgccagtgagagacagagagcccagAGGAGCAGCAAGAAGAGCCAGGAGGACCTCCCACCTGTCAGTCAGGGGAAAgTGTTCCAGGAGTGGGTGATGGTGACCCATGTGGTGAACCCTAACCACTTCTACATCCGCCACGTGGCAGAGCAGAGGGCCTGTATTCTGCTGTCCAAGAAGATCAACTCCCTCTGctctggagagagaggactgttcaCAGCCAGCGACATACTGGAGACTGGCTCCACAGTGTTTGTGAAGTGGAAGGAGGGGATGTGGTGTCGGGCCACCCTGACAGAACTGTTCCAGAGAGGTCACCTGGACCCGGTCCGCAGCTGTCCTGTTCCTGAACTTCACCGTGTCAGAGTCTACTTCCAAGACTACGGTTTCTGCAAGGGAATAGCCCTGCAGAGTGAGGAGGCGGGTCCAGACCTGTTCATCAGGGACATGAATGAGCGTCTGAGAAGAGTGGACGTGGCCGGCCAATCAGAAATGAGCCGCTGGCTCCCTCAGGCTATCAAGTGTTCCCTCAAGGACATTGTGCCTGCAGACCTGaCTAAAGGCTGGAGTGCGGAGGCCCAGGATGAGTTTCGCCGCGTGGTGGGCTCAGCCTCAGTAGAGATGCAGGTGTTTGGTCAGGAGAGAGGTGCTCTGCTGGTGGACCTGAAGAAAGCCCCCATGGACAGCGGTTCCAGCAACATGCCCATGTCCCTCCGAGAGTACCTGGTCTTCCTCGAGCTCGCCAGGTTTTACTCTCCTGTGGCGtggaatgccaagactgtgccaTGTGGCAGGAGGCCTCTCCAGTTCTACCTTCCTGTCTTCCCTCGTACCAACGTAGAGCTCAACGCTGTGGTGTCCCACATAGACACACCCTCACACTTCTACATCCAACTGGTTGACAACATGGAGTTCCTGCTGCTGACAGCCAAGCTGCAGGAGTGTTACAGCTATGACTGCCCCAGCAGGGGGACCAGAGGAGAGGACCAGGACTTGGAGGTCTACTGTCCTGTCCTGGATCAGGCCTGTGTGGCACGCTTTGACGACAAGGTCTGGTACAGGGCCCATGTCATCGgtaTTCCCGGGGGCAGGAAGGTGGAAGTCCAGTTTGTAGACTTTGGCAACAACAAGATTCTGTCAGTCAACGACCTGAGGAAGATCAAGGATGAGTTCTTTGCCCTCCCAGCCATGGCCATCCAGTGCTACCTGGCTGATGTGATTCCTTTGGAAGAGGGTGAGACGTGGAGCAAAGCGTGTATAGAGAAGTTCAAGAGTCTTGCTGACCAGAGACTTGTGACTGCTGTGGCCACAGAGGCTGGTCGAAGGGGCAGGGGTCTGCCAGTCAGGCTGTTTGAGACCAGTGATTCCAGCGAGCCGTTAGCAAACATTGAAGATCTGCTGGTCAACGACCAACTGGCCTGCTTCAAGAagggCATCAAATCTAAGGACACCCAGGCCCCGGTGGTAGACACCACAGTGTGGGACCCCCCACTCGAGGGTCTTCTGGGTGAGTGTGAGCCAGCCCCTACCTCCCTGGGACAGGAGACCCCAGAGCAGGACCAAGAGATCCAGCCCTACCTGATGCTGCCGGCCAACCTGAAAGACCTGAGGGTCAGGTTGACCCACGTGGTCTCACCCGGGAGCTTTTACGTCCAGCTTCTACAGATGGACACCCAGCTCAAGAGGGTGTATGAGTTGTTGAAGCAGGAGTATGCCCGTACAGAGCCCCAGGCGATAGAGTGGAAGGCAGACATGTACTGTGCTGCCTACAACAACGGGGTCTGGGAGAGGGGCCAGCTCTGCTCTCCTGTTTCCCTTGACTGCATTGCCGAGGTAGTACGCTGTGATTTTGGCAACAAGGTGAAACTCCATGTGAACAACCTGAGACCACTGCTGCCCAGTCTGGTTGGCTGTCTGGTGCTGGAGTGTTCCCTCAGTGAAatcagaCCTGCAGGCGGTCGTTCCACCTGGACAGCCACGGCGTGTGACTTCATCTCCTACTACCTGACAGGAGCCATGGCCATCATGACCATCAAGGAGAACACAGAGCAGCGTCCGGTGCCGGTCTCTCTGTACTGCTCCAACCGGGCCGGGCAAGACGTTAGCATCGCAGACTTCCTGGTTAGTGAGGGCCTCGCTCTGAAAGAGAGGAAGCCACAAGCGTCCCCCATGCCTAAACTAGAGGAGTTATCAGACTCTGACTCCAAGTTCAAGGGCCTTCAAAACAGGACACCTAACACAGAAAACcagccccccaccccctcctctgacTGGTCAGTCTCTCCCCGACCTGTCTCCACTGCCCCTACGCCGCCCAAACCGGCCCCCCGTACTAACCCCTCCCCAGAGAAGGTGAAGACACAGGCCTACTGCCCCCCTGAGCTGCCCCACTGTGGACGCACTCTGATGACCATCTCTGCCATCGGAGAGGATGGCCTCATCTACGCCATGACGCACCACGCAGGGCGTCAGTTTGAGCAGCTGCGGGAGCGTCTACAGCAGCACATAAAGACCCTTCCCAGGCTGAAGCCCTACACCTGGAAGAGTGTCCTGGGTTGTGCTGTAATGGGCTCTGACATGCTCTGGtacagaggagaggtgctggagGTCATTGGAGGTCATGTTAAGgtgcgCTACGTGGACCAGGGTCTAGTGGAGAACATCCCAGTGTGTCACGTCTACCCCACAGTGTTGTGTGAGGATATTCCCCAGCTCTGTATGCCCTGCCAGCTGCACGGAGTCATCCCTgtGGGCAGGACGTGGCAGTGGGATGCTGTGGCTCTGCTGAAAGAGCTGCTGCTAAACCGCTGTGTGGACATGCAAGTTATGGAACTGCCTGAGGATCCTCTGGGCTGTCTGACAGTACAGATTTCTCTGGATGGCATGACTCTAAGCAGAATCATGGTTCACCACCAACACGCCTCTGTAGACCAGGCTATTGCATCCACGCAGGAGGAGCTGGTGGTGTCATCTCACCTAGATCTAGATGACTGGGACATTGACACAGAGGGTTTGGAGGACCCAGAGCCAGTACCGAGGGTGTTCTCATACCCAACCCTGCCTGAGAAAGGCGAACGCTTCCGGGTCAGGATCAAACACCTCCGGACCCCCAACGAGGTGTTCCTGTATCCCTTAGATGGCAGTAGTTGTGTGGAGTCTGGTGGGGAGAGTCTGGAGGAAGCACTGAAGAGAGTCCATGACAGGATTGACCGTCTGGCCATGCTCTCGGACTTCGCCATTGAGGCCCCGTGTCTGGCAGAATACAGTGATGGGAAGTACTACCGGGCCAAGCTGCTGGGCTTCGCTGGCCTCAACCCTGTTAAGATCTTGGTCAGACACGTGGACTTTGGCTCTGACGACACCCTTCCCACACACAAGCTGCGTCAGATCCCGGCCCATCTCCTGCGGTTTCCCTGTAAGGCCATCAAGGTGCGGGTGGCGGGCTTCAGACCACCCCGCCACAACCTGGAGAAGGAGCGCCTGTCCTACCGGCCAGAGTGGAGCCTGAAGGCTGCCCTGGAGATGATTGACCTGCTGCACAGCTGCTGCACCGCATCCGTTACCGCCACTGAACCGGagctgtctgtgttcctgtatgACGAGGATGGAGCTCTGGTCTACCTGCCTCTGGTGGAGAAAGGGCTGGCTGACTTTGACTAAGACACTACAGCAAGAGACAAAGagatctGCTGTGACATTGGACAGGTTCTTCAGTTCCCTGTTCCTTCTGCATTGTAAGAATGCTGCcttcaatatacagtacatacaaatcTCAAACATTTTGTTTTGAGCAGAATGTAGCTGAACACTTTATTTTCTATCTGAAATACTGTCTGTATGAAGGGTACAGAAGTATTAAAGTTTTCATTTAAAACTG

Function

symbol description
rnf17 Predicted to enable metal ion binding activity. Is expressed in gut; pharynx; and primordial germ cell. Orthologous to human RNF17 (ring finger protein 17).

NR:

description
RING finger protein 17

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597738.2 True 5319 mRNA 0.55 37 66036342 66070134

Neighbor

gene id symbol gene type direction distance location
ttf2 ttf2 coding downstream 8741 66020033 ~ 66027601 (-)
LOC110520422 vtcn1 coding downstream 52217 65978825 ~ 65984444 (-)
LOC110520420 trim45 coding downstream 57633 65973480 ~ 65978709 (-)
LOC110520419 man1a2 coding downstream 72629 65853721 ~ 65963713 (-)
LOC110520418 fam46c coding downstream 195864 65821455 ~ 65840478 (-)
LOC110520425 LOC106582038 coding upstream 112982 66183116 ~ 66193487 (-)
LOC110520429 LOC106586615 coding upstream 198051 66268185 ~ 66295887 (-)
LOC118964314 NA coding upstream 329933 66400067 ~ 66412373 (-)
LOC118944607 LOC106582097 coding upstream 402205 66472339 ~ 66475059 (-)
LOC110520431 LOC106586619 coding upstream 420334 66490468 ~ 66537895 (-)
G287666 NA non-coding downstream 36153 65997968 ~ 66000189 (-)
G287664 NA non-coding downstream 38752 65993773 ~ 65997590 (-)
G287556 gdap2 non-coding downstream 252681 65782911 ~ 65783661 (-)
G287697 NA non-coding upstream 5049 66075183 ~ 66075418 (-)
G287706 NA non-coding upstream 18171 66088305 ~ 66088557 (-)
G287853 NA non-coding upstream 37738 66107872 ~ 66108434 (-)
G287919 NA non-coding upstream 139027 66209161 ~ 66246589 (-)
G287929 NA non-coding upstream 162573 66232707 ~ 66234021 (-)
G287112 NA other downstream 455847 65579791 ~ 65580495 (-)
G287042 NA other downstream 589059 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 735925 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 800434 65235180 ~ 65235908 (-)
G286638 NA other downstream 960357 65054700 ~ 65075985 (-)
G288578 NA other upstream 772537 66842671 ~ 66842881 (-)
G289678 NA other upstream 1556698 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 1813618 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2136456 68206330 ~ 68208674 (-)
G290542 NA other upstream 2508969 68579103 ~ 68580707 (-)

Expression


Co-expression Network