LOC110520425 (LOC106582038)


Basic Information

Item Value
gene id LOC110520425
gene name LOC106582038
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66183116 ~ 66193487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110520425
TTCATCAACCGTGACAGGCAGAAGATCACCACTTCCTGTGCCAAGGGCAACAGTTTTCTAGACCTGGTCGTCGACCAAAACGTATATATCGATGGCTTTGgTGTGTGTGAGGGGACCCTGGCCTGTTCCATCTGTCATGTGATCCTGGATCAGAAGGGGTACGACCATCTGGGGCCCATCATTGATGAGGAGAATGACATGCTGGACCTGGCCTTTGGCCTCACTGACATGTCTCGTCTTGGTTGCCAGGTCTGCCTATCCAGAGATCTGGAGTGAGTAACAGTCCGTTTGCCAGACGGGGTGAACGACATAGGCGATCTGATGATGCTGGACCTACACTGTAAAACAAATggtgttgtttttacaatattatACAATAAAAATAACAGTACTGTATTCATTATTTACAGTAAATTGCCGTAAATCGCAATGCACTGTGGGTGATTTTAGGCATAACTGGTAAATTATACCGTAAATTCTAAATAAACTTTGTtttaacagtacattactgtaaagaAGTGCTGTATTTCGAAAGGTACTGTAATtccaccccacagaatacagtacctTACCAGTAGTtggtgcatggtattgttgtttcaTGGTGTTGTTGTCTCATTTTGAGGAATGCCTTGTAAGAGGCTACATTTTTTGCAACCGTTAGTTAGAGTGATCTGGTGATGTAGAGTGATGTAAAGTGATATACCAATGTATCTGATGTGTGGCAACAAGTCCTAAACCTTAAACGGTTGAGTATTTGCCGTACCCATTGGCCTGTAGTCACCGCCAGTTTGGAAGACTTTGTTAAGGATtctagaagtgcaagtgatataaaatataaaatattaatatatactgaacaaaaatataaacgcaaaatgcaataatttcaaagattttactt

Function

NR:

description
PREDICTED: adrenodoxin-like

GO:

id name namespace
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110520425 True 904 mRNA 0.41 3 66183116 66193487

Neighbor

gene id symbol gene type direction distance location
rnf17 rnf17 coding downstream 112982 66036342 ~ 66070134 (-)
ttf2 ttf2 coding downstream 155515 66020033 ~ 66027601 (-)
LOC110520422 vtcn1 coding downstream 198991 65978825 ~ 65984444 (-)
LOC110520420 trim45 coding downstream 204407 65973480 ~ 65978709 (-)
LOC110520419 man1a2 coding downstream 219403 65853721 ~ 65963713 (-)
LOC110520429 LOC106586615 coding upstream 74698 66268185 ~ 66295887 (-)
LOC118964314 NA coding upstream 206580 66400067 ~ 66412373 (-)
LOC118944607 LOC106582097 coding upstream 278852 66472339 ~ 66475059 (-)
LOC110520431 LOC106586619 coding upstream 296981 66490468 ~ 66537895 (-)
LOC110504514 NA coding upstream 538750 66732237 ~ 66747293 (-)
G287853 NA non-coding downstream 74682 66107872 ~ 66108434 (-)
G287706 NA non-coding downstream 94559 66088305 ~ 66088557 (-)
G287697 NA non-coding downstream 107698 66075183 ~ 66075418 (-)
G287693 NA non-coding downstream 113756 66069137 ~ 66069360 (-)
G287666 NA non-coding downstream 182927 65997968 ~ 66000189 (-)
G287919 NA non-coding upstream 15674 66209161 ~ 66246589 (-)
G287929 NA non-coding upstream 39220 66232707 ~ 66234021 (-)
G287951 NA non-coding upstream 84893 66278380 ~ 66278703 (-)
G287953 NA non-coding upstream 87083 66280570 ~ 66280905 (-)
G287954 NA non-coding upstream 88126 66281613 ~ 66281866 (-)
G287112 NA other downstream 602621 65579791 ~ 65580495 (-)
G287042 NA other downstream 735833 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 882699 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 947208 65235180 ~ 65235908 (-)
G286638 NA other downstream 1107131 65054700 ~ 65075985 (-)
G288578 NA other upstream 649184 66842671 ~ 66842881 (-)
G289678 NA other upstream 1433345 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 1690265 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2013103 68206330 ~ 68208674 (-)
G290542 NA other upstream 2385616 68579103 ~ 68580707 (-)

Expression


Co-expression Network