LOC110520429 (LOC106586615)


Basic Information

Item Value
gene id LOC110520429
gene name LOC106586615
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66268185 ~ 66295887 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597740.2
TGAATGGTAGACACTGCAGCTCCATCTGTTCACACTCACATTGTTCAACCCTCCTGCCTTGGGACCAGACTGCAGCACTACCAAACCTAAAAAGGCATTGAGTTGAGTTGAGTTTGGACCACTGTGCTACAAGGAAGCTTGATTCACTACACCTCCGTTTGGATTTTTTGTCACTTTATTCATTCTCTGCTGGATACATAGAACCTGGATTTGTACGTACAAAATTTGAAAAAGCTGAGAAAGTCCTTCTGGCATGCTGGAATGACCAAAGCTATTCTGTCCAGAGCATATCTTTAGGAGTTCCTTCTGTATTTGTGTTGCTGTTCTTTTCTTCTTCCTTGAAGCCTGTGgCTTCTGTCTCAGGATTGGTCAGAGAGCAGCCTATCAGCAGCAGTGACATTGGGGTCGTCCGGGGTCAGAGGTCCGGTGTTAGATACTGGATGTATGAGACGGCTTAATGGGCCTGAAGGACCATCTGGAGGATGAAACAGGCCACATCCTCAACCTGGGGCTGGATTTGGACTACCTCCACGTGGAAGGCACCGACCGCCAGGCCAGCTTGAGTGCCACAGTTGGCACCCACTCAGGAGCCTTGGAGAGGGACGAGACGGAGGTAGGAGGCACCCATAGCAGTGTCAGTAGTAGCAGcatcagcagtagtagttgttgtagtaacTCCTCTGAAGAGAGTGCTGCGTCAGACAGCGAGGATGAGCGAGGGGTCCAACATGGCTCTGGTTCTGATGCTCAGACCACCCACCCACTCCCCTGTCACCCTGCTGGGCAGGGCCCGGCACAGAGCCCCCAATCTAGAGACCCAAAACACTCCACCAACCCCTTCACAGAGTATCGCTCCAAGTTGGAGTTTGCCCTGAAGCTGGGCTACTCTGAGGAGCTGGTTCTGCTGGTTGTGCGGAAGCTAGGGCCCGACGCCCTCATCAATGACATACTGGGAGAACTGGTCAAACTGGGCACCAAGTCAGAAACGGATCAGGCTGGAGGGTCAGCCACCTCCCActcgccctcctcctcctccttatcctcctcctctctggacTCCTGCAGGCTGGACTGCTCCTCCCAGCTGCTGTTGGATGACAAGGAGAACATCAGGCCTGTGGTGGTGGATGGGAGTAATGTAGCCATGAGCCATGGGAATAAGGAAGTGTTCTCCTGTCACGGCATCCAGCTGGCTGTTGATTGGTTCCTTGAGCGCGGTCACCGTGACATCACTGTGTTTGTGCCCGCCTGGAGAAAGGAACAGTCCAGACCGGACACTCTCATCACAGacCAGGAGATATTGCGGCATCTGGAGAAAGACAAGATCCTTGTGTTCACTCCCTCTCGTCGGGTCCAGGGCCGCCGGGTGGTCTGCTACGATGACCGCTTCATCGTCAAGCTGGCCTACGAGTCCGACGGCATCATCGTCTCTAACGACAACTACCGGGACCTGGCCAATGAGAAGCCAGAGTGGAAGAAGTTCATTGACGAGCGGTTGCTCATGTATACGTTCGTCAATGACAAGTTCATGCCTCCTGATGATCCTCTGGGTCGCCATGGTCCCAGTCTGGAGAACTTCCTGAGGAAGAGACCAGTTATCCCAGAACACAGGAAGCAGCAATGTCCCTATGGGAAGAAGTGCACTTACGGCCACAAGTGTAAGTTCTTCCACCCTGAGAGAGGCAGTCAGCCCCAACGCGCTGTGGCCGACGAGCTGCGTGCCAAGAACTTCTCTTcatcctctacctcttcctccaAAATGGTGGGCGAGGCTCTGATGGTGAAGAGTCACAGCATGTCCAGCAGCTCCAGGGTAGACGGGATCCCAGACCCCCACCAAGCTCCCCCGAAGAGACAGTCGGACCCCAGCCTTTGCGCCCCCTCCTACAACGACCTCCTGGAAGAGCGTCTGGGcaggaggactaaaacagaggcCCGCAGagggagtagcagcagcagtagcagcagcagcagcagcctcctggCTTCTGCTCCTGGGGGACCTCCTTCCAGCCATGGCTTCTCTCTTCAGGACTGGGGGAACACCTCCTCCAGAGCTCCAGGGCTGTCGGCGCTTGGTCACTCAAAGTCATACTCCACCTGTGAATCCCCGGAGCTAAGCTACCACTCCCTGATGGGGGCTTACTCCAGCCTAAGCCTGGTAGTGCCGCGGAGCCCCGATCGGCTGTTCCCAGCTGACCTACGGACGGGCTCAATGGTGTCTGACTGCAGCAGCGAGGGCAGCGTGAGCTCAGACTCCTTCTCCCCTGATCCGCTGCTGGATGACAGCCTCAAGTGCCACTATCCccacccccatcaccaccaccatcactgccCTAGCTGCTACCCACATCACCCCAACCACCCACCCCCTGGTTTGACCCAGCACCCCCATGGAGGCTCCCACCATGGCTACCCTCTAGCTCAGAGCagcctggaggatcctccctcctccctccaccacttcaaGGCTCAGCTCTCCTACCTTCCTCCCCATATTCAGCAACCGTCTGTGGGGAGCCACTCTGGCTGTTCTGGGAACTACCCTCCCCAACCTCTATCCCAGACCTCAAGCCCCCACTCCCACTCTCACAGCTCTCCTCTGGGGCATAACCTGGGGGGCTCCACCTGGCAGGACAACAACAGCCTCTACAAGCAATCCCCTGTCCACCCAAGGAGGATCTACCCTGGGCCAGGACAGGAGCAGCGACTGGCCAGATGGGACCCCCACTACAAGCATCTCCCCCAGGCCTGCTACGAGCCTTTCACTTTCCAGTCCCTGCCTGAGGGCCGCAAACAACCCTGGCACTCGCCCTGGCCCAGGGGGACACACTCTCCCCATCCTCAATCCCTTTCCTCCTCCCATCTTCCACCTCTTACCCACCACTCTACGGCCCCCCAGCACCAGGAGCCCCCTGCCCTGGGCAGATACCAGGACGTGAGGGAGAATGTGTTTGTCAACCTGTGTAACATCTTCCCGCCAGAGCTGGTGAGGGTGGTGATGGTGAGGAACCCCCATGTGATGGACGCCCAGCAGCTGGCTGCAGCCATCCTGGCTGAGAAGTCCCAGGCTGGCTACTGAGTACTGACACTACTGTAGCAGAGGAAATAAGTGGCGTGCTCAACTCTATAGTCTCCCCAAAACATCTACGATGCAGGGGAAGATGCTTTATCTTTTTCCATCAAATATTATTTTTTCAACcttattgtttttttttcactGCCCTGCTCGTTCATTACTGTTGTGTGGTATGAGAACATCTTCAGCACTTAAGGTCAGGATTCCGGAGATTCTGAATGAGATGTGTTgctttaattaatttattttgtaatatattttaaattatttcTATAGCTTTTAATATTTTTTAATGGCACTTTTAATAGATTTATttatgatttttattttatttttggaaatCATATCATAGGGTAAGGAGGGCTCAAGTGTTTCAGGGTGCTTCAGAGTTAGGGAAAGTCCTGAGGTGTCAAAACAGGGTGAATTCTGGGATTCCAAATCTAGGGTATGGTTTAACGTCATAAAATTACACTTCCAAACATTTAAACTTAAAGACAAAGCAAATACATAAGTCCAAGCTACACTGATTTAATTTTATCCCTGTCATTTCTCATCAGAGAattgttaaaacaggtggtgaattTGATATCATTATTGAAAGATTTGATGAATTTCCCCTTTAGAGAAGTGAAACGTAGGAACTCCAACTGTTAAAGGCCTGATAAAGTTAATGTGAAAACCCCAGATTATTGTTTACTCTTACGTACAGGAGCTAGTTCCTCTCTGGGGAGAGACCAAAAACTTACTTCACAGCATGGAAGATTGCGATATTgattttcttttcctttttttaatcatttttctttgtcctccaaaaaaCATTCTGGCCATTGAAATCATATCAAGATGGTTCTTGAGGATATTCAAACTAGTGCAGGTGCACTGTTCGTTTAAAcagtttttttaatatatattttcattttaCGTATGAATGTGTTAATTTATTTGTCCCTTTGTCATTTTCATTATGAGTAAGAGTATTTTAGTTAAAGAGGGTATCATTACAAGAGAAGACGTCTGGTGtaaccatccagacagacagacaactgtAACTTCAGTCTGTGGACAGGGTATTTCTAGACTCTACCTCCTGGCTTAGAATCCATTGCAAGTTGTCACTATCACTGAGTGAATATAATAAATAGTTAGGCAATGACACCTCTGTGCCTTACTCACACACAGCAGTCCAAAACACTGGACTTGTGTTGCCAAGGTAACCTGACCATACTTTAGTGAACAAGAGAATGCCTCTCCTCGTTGATACAAATTGTATCCTATTAACTTAAACCAGATCATTGTTTTATATGAGAAAATTTATACACAAGGTATTTTGAGTATTTGTGGCGTAATTGGTCACATTTGTTACTGTtctaaaatatactgaacaaaaatataaacgcaacatgtaaagtattgatcccatgtttcatacaagatcccagatattttccatacgcacaagaagcatatttctctcaaatgtttccatccctgttaatgagcatttctttTTTGCCAGGATAATCCAgatgtggcatgtcaagaagctgattaaacagcattatcattacacaggagcAACTGTTGTTCAGTAAATATTTTGGGATTTTTAAAAATGGTGTTTTAAGAAGTATTTGTGAAAGAAAAGGGCATCAAATGCAATTTCTTCAAACTACTGTACATTGATTGATGATCAGCATATAGAGAGGACAGAAAAAGGTATGTGATATCCGGgttccttgggacgtccctaccccattgaagttgacatttgaaatggttaaggtttgggttaggtaATGGTTAGGATGGAGGTGAGGGTTTaaggtagggatgtcccaaggattccGGATAGCACTGATCGACAGGAAAAGGTGGGTTGTTGTTTTATTATTGTTGAACTGAAATTGTGTTGGGTGGTCTCAGTCATGTGAGTGTGACTGTGGGGGTCAGCTTTATGGTGAAGCCATTATTTGTTCACCATCAGCCTCTATTGACAGTCATGATCTTTCTCTTGATATATTTCTGTACAGTGGTTCTCAGCTCTCTCTTCAAACTAAGGCTATCCCTCCAGAGGATCAGTGGAACACTGCTGACTGGACAAAGACAGCACTTAGTCTCTGGAACCAGTTTCTCAACATGACAACAGCCAAAAGTGCATTTTTTTTAGCTGAGCAACGTGTAGCACCTTTCTAGGGCACTATGTGCCAGTGTGCTTCTGTGTGTGGCAGAGTATTAAATGCCTCTACATGGCATTGTGCTTCTTTTAACCACATCTGATGATAGTCTGAACCATGTTCagttaaaaaatgtaatatttttccATGTTCAGATTTTTTAAAGAGATGTTTTTGGAATTCTGTGtgatgtttttaattttttatcaGCATAAAGATATTTGAGGGGAATTCTTTGGGTGGTTTTCCTCAGTGTCACTGGATATGgcctgtgctgtactctactgttaatCTCTGCTATAATGAAACACCTTTTGATGAGGTGACTTGTTCGGTTTATTCGGTTTGCAGacagtgtatactgtatgtcagtGGTGGCTGTTGAGGGAAGGATGGCTGGAttgagtaaatggaatggcatcaaacatggaaatcatgtgtttgataccattccatttaatctgctccagccattaccacgaggcCATCCTCCCCAAtttaggtgccaccaacctcctgtggtatatGTGCTGGTTTTTGTATACAGTACTTGGTTGAATTTCTTCCACcaattttttttatcattttgGAATTTggttaattttattttatttcatctgaCTGGTTAGAATATTATTCTATTTGACTTTGTTTCATTGTGTCCGTCTGTATCCAAGGCCTACAATTCAGGTTTAAAAAACAGTTTGTCAGACACTTCTCCAAATACCATGTATAATTTATTGAAATATTCATCCCTGTTGTGCTTTAAATCCAACATAATTTGTGCTACAATAAAACTGTTAAATCTAATAAATGCCTTATAAAAGTGCAAAAAATAAGGTTGGGATGCAGTATTCCGTCAGGGATAGTGTTAGCCTATGTTATATATGTATTATGATGATCCCCTCTTCACAGGTCAACATGGGTCATTTCAAGCCAAAATGTAATGGAGGAAAATGGAGAACTGTGACctgatgtgatgttgatgttcTTGCCTTAGTGACTGTGCAGTatgtgaatggggggggggggggggggggggggggggcagcgcaTGTTAAAACAATGAGCTTTAAGTACCGTAACCCCAGAGCACGTGACTCTTTATAATACTCTGGCATGTGTAGCAGTCTTACTTGCTGATTCAGGGAACTGAGGCCAAATGGAAAATGTTGACTCCTTATGAGTTATGAATAATAAAGCAATAAAGCCTTA

Function

NR:

description
probable ribonuclease ZC3H12C

GO: NA

KEGG:

id description
K18668 ZC3H12, MCPIP; ribonuclease ZC3H12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597740.2 True 6471 mRNA 0.47 6 66268185 66295887

Neighbor

gene id symbol gene type direction distance location
LOC110520425 LOC106582038 coding downstream 74698 66183116 ~ 66193487 (-)
rnf17 rnf17 coding downstream 198051 66036342 ~ 66070134 (-)
ttf2 ttf2 coding downstream 240584 66020033 ~ 66027601 (-)
LOC110520422 vtcn1 coding downstream 284060 65978825 ~ 65984444 (-)
LOC110520420 trim45 coding downstream 289476 65973480 ~ 65978709 (-)
LOC118964314 NA coding upstream 104180 66400067 ~ 66412373 (-)
LOC118944607 LOC106582097 coding upstream 176452 66472339 ~ 66475059 (-)
LOC110520431 LOC106586619 coding upstream 194581 66490468 ~ 66537895 (-)
LOC110504514 NA coding upstream 436350 66732237 ~ 66747293 (-)
rpe rpe coding upstream 724567 67020454 ~ 67023408 (-)
G287919 NA non-coding downstream 21596 66209161 ~ 66246589 (-)
G287929 NA non-coding downstream 34164 66232707 ~ 66234021 (-)
G287853 NA non-coding downstream 159751 66107872 ~ 66108434 (-)
G287706 NA non-coding downstream 179628 66088305 ~ 66088557 (-)
G287697 NA non-coding downstream 192767 66075183 ~ 66075418 (-)
G287970 NA non-coding upstream 4846 66300733 ~ 66300973 (-)
G287976 NA non-coding upstream 13191 66309078 ~ 66309310 (-)
G287992 NA non-coding upstream 26106 66321993 ~ 66322192 (-)
G287993 NA non-coding upstream 26480 66322367 ~ 66322596 (-)
G288116 NA non-coding upstream 39814 66335701 ~ 66335916 (-)
G287112 NA other downstream 687690 65579791 ~ 65580495 (-)
G287042 NA other downstream 820902 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 967768 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 1032277 65235180 ~ 65235908 (-)
G286638 NA other downstream 1192200 65054700 ~ 65075985 (-)
G288578 NA other upstream 546784 66842671 ~ 66842881 (-)
G289678 NA other upstream 1330945 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 1587865 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 1910703 68206330 ~ 68208674 (-)
G290542 NA other upstream 2283216 68579103 ~ 68580707 (-)

Expression


Co-expression Network