LOC118944713 (LOC106592868)


Basic Information

Item Value
gene id LOC118944713
gene name LOC106592868
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67776411 ~ 67786849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965132.1
ATGTTACTGAAGCTGAGCTGTGTGATTCTACTCATCATCCAGAGGGATACAGAAAGTACACAGGTCATTGGTGAATGCAGGACTGTGGTACAGGGGGAGGATGTGGACTTATCCTGCAGACTGATAGAGAGAACACAGGAGCTTAAACACATAACATGGCAGAAAAGTACTCAGCATGAAAAACATAATTTGATTCATATTTATCCAAATGGGGTTACTGACTTTGTTGTATCAAATGGATTAAAAGGCAGAGTTCAGTTAATTGGGAACTTATCAGAAAAACTTGGATCAATTCGAATAACAGCTGTCAGACTGTTGGATGAAGGCACCTTCACATGTATCTTCAATGTTTTCCACAGTGGAGCATACACTACAGAGATATCTCTGACTGTGCTTGTTCCTCCAGTAGTGAGTGTGACAGTCGATGTCCCTCCTGTTGTTGGGGAGAAAGAGGTTATCCTGGCAACCTGTGTGGCTGCTGGTGCCAAGCCACAGGCAGATGTGAAGTGGAAGACAGGGACATTGGGCAGTTTGTTGAAGACAGTGACTAACTCCACCCAGCACGCCAACGGAACCACCACAGTACTCAGCCAACTGCTCGGGGTGCCAACCAGAGCAGCCAATCAGCAGCAGGTCCAGTGTGTGGTCAACCAGTCTGCCCTGGCAACAGAAAATAGCTTCAACTACAccatagacatccactaTCCACCTCAGACAGTGAACATTACTCTTAGTGAGACCTCTCAAACCTTAGTCCTATGTGTAGCAGATGGTAACCCACAACCCAACTACACCTGGAGCAGCTGGCTGcagaaacacacacacacactctcatacatTGTCCTCGACTCCCTCCCCAGAGAGGGCCAGCCATGGCCTGGCTCTTcagtgagagcagagagagacacactaatTCTCCTCAGTCTCAGCTCTGAGCTGAATGGTCTCTATGTCTGTGAGGCCTCCAACCCCTATGGACGAGCAACTGGCTCCATCTATGTAAACACTTCCTCTGGTGAGAAGCACCTTACACAAACAtattcactgacacacacacgttgTTGCTTAACTGATTGCTTATAATAACtgtattccctctctcctcacagagACCTGCCACGTTCTGCTCGTTGTTATTCTATGTCTTGTGTCTATGTGTTGCTGCTGCTCCTGCACTTTTATGGTACTGGTGCAAATACAGAATATTTCCTCTAACTTCAGTTTCTAAAAATCAAGCactgaaaaaataaatatttgtattGAAGACA

Function

NR:

description
nectin-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965132.1 True 1268 mRNA 0.46 6 67776411 67786849

Neighbor

gene id symbol gene type direction distance location
LOC110520454 LOC106586643 coding downstream 70190 67685050 ~ 67706221 (-)
LOC110520453 LOC106586647 coding downstream 139753 67617490 ~ 67636658 (-)
LOC110520452 LOC106586638 coding downstream 207713 67545597 ~ 67568698 (-)
LOC110520451 LOC106586637 coding downstream 234082 67524601 ~ 67542329 (-)
LOC110520443 LOC106586629 coding downstream 489451 67275729 ~ 67286960 (-)
LOC110520455 LOC106586642 coding upstream 49856 67836705 ~ 67881418 (-)
LOC110520458 LOC106586647 coding upstream 113507 67900356 ~ 67916858 (-)
nr1i2 nr1i2 coding upstream 338754 68125603 ~ 68147765 (-)
si:ch211-214p13.7 NA coding upstream 419481 68206330 ~ 68208674 (-)
LOC110520466 cd200 coding upstream 440423 68227272 ~ 68253241 (-)
G289652 NA non-coding downstream 96244 67678862 ~ 67680167 (-)
G289677 NA non-coding downstream 144599 67625400 ~ 67631812 (-)
G289676 NA non-coding downstream 145202 67624211 ~ 67631209 (-)
G289674 NA non-coding downstream 147910 67622118 ~ 67628501 (-)
G289421 NA non-coding downstream 185009 67591065 ~ 67591402 (-)
G289754 NA non-coding upstream 137083 67923932 ~ 67924167 (-)
G289757 NA non-coding upstream 142622 67929471 ~ 67929673 (-)
G289759 NA non-coding upstream 144494 67931343 ~ 67931791 (-)
G289767 NA non-coding upstream 153927 67940776 ~ 67940975 (-)
G289678 NA other downstream 142918 67626832 ~ 67633493 (-)
G288578 NA other downstream 933530 66842671 ~ 66842881 (-)
G287112 NA other downstream 2195916 65579791 ~ 65580495 (-)
G287042 NA other downstream 2329128 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 2475994 65298207 ~ 65300417 (-)
G289653 LOC106607871 other upstream 96903 67883752 ~ 67886232 (-)
G290542 NA other upstream 792254 68579103 ~ 68580707 (-)
G290567 NA other upstream 839483 68626332 ~ 68647620 (-)
G290598 NA other upstream 923518 68710367 ~ 68717385 (-)

Expression


Co-expression Network