LOC110520467 (LOC106586653)


Basic Information

Item Value
gene id LOC110520467
gene name LOC106586653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68278572 ~ 68292750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597810.2
agagagagagagagagaggggaggaatgaaATGAGAGTgtgagagcaagagcgagagagagagaaattgggaaGAAACAGAGATACCACCTTACCTTAACAAAAGAAGATCCTCCtctggactgggactgggacgaGAGACAGGAGTAGGACATGGCTGGGTACAGGCCGAGGGTGATAGTGCTGAGTAAGAAGCCAGGTCAAAGTTTTGGCTTCCTCTTGAGGGTGGAGCAAGGAGAGGATGGTCACCTGATCAGGAACCTGGAGAGGGGCAGCCCGGCCAAGCTGGTGGGTTTGAAGGACGGAGACCGCATCCTCCGGGTCAACGGGACCTATGTGGACGAGATGGACCACACacggGTAGTGGACCTGGTGAAGGAGAGTGGTACATCGGTCACCTTCCACGTTCTGGATGTGGCATCCTACAAGCAGGCTAAGACTGAGGGGGTGGACCTGTCTGACCAACACGCCACACCCACTCAGCACGCCATGAACGGGGTGGGAGGAGGGGCGCCCAAACCCAAACTCTGCTACCTGGCCAAGTCCAGCGGGGGCTACGGCTTCTCTTTGCGCTCTATCAAAGATGAGAGGGGTGACGTGGGCATGTTCATGACAGAGGTGGCTCCAGGGGGTGTGGCCGGGAGGGCAGGGGTCAAGACCAACGACCGCCTGATAGAGGTCAACGGGGAGAACACGGAGAACGCCACTCATGACCAGATAATTGAAAAGATCAAGGCATCAGGCAGCAGCGTCATGTTCCTATTGGTGGATGAGGACACAGACAGGTTCTACAAGATAAAACGCATCAGGATAGGGGCGGGGCTAGCCACAGCAAAGCTCCTCCCACTGAAGCCACGCATCGCAGACTTGGTCAAAGGATCAGACGGCTATGGATACTTCCTAAGGACTGAGCCTAACAAGACagGCCACTTCATCAGGGACATTGACAGGGGTAGCCCAGCTGAGAGGGCGGGATTAAAGGAGATGGACAGGCTGGTTGCCGTGGAGGGtgtggaagtggatggctgcagcCATGAGCAGGTGGTGGACAGGATCAGGCAGTGTGGCAGCAAGTGCTGCCTCCTGGTGGTTGATGAAGACACTGACAAGCTCTACAAGATGGGAGGCGTTTCTCCTCTGTTCTACTTGGAAGAGATTACGGAATCCCTCCTTCCAGCAACCCCTCCACCCAGCTACCCAGAGAGCGTGCCGGCCCCGGTCCCAGACCCTGTTACCACAGACCTCCTCAAGCTGTGCAAGATGGAGAAGACCTCCGCCGGGTACGGCTTCCACCTCAACGGTATACAAGGAGTCTTTGGCCAGTATGTCAAAGAGGTGGTGAAGGGTGGAGCCGCGGACAGGGCTGGTCTAGAGGACGAAGacatggtggtggaggtggacggTGTGAATGTGGAGCAGAGCAGTCACGAGCAAGTGGTGGGGTTGATCCGTAAGAGTGGCAGCTCGCTGGTACTCCTAGTTGCCGGGAAGCAGGCCAACGACCACTTCAAAGCCAAAGGGGTGGCCATCACTCCTCAGCTCTTCATCCCCTCGTCCCAAGCCAGGTCCCCATCCCCAGCCCCGTCCCCGTCCCTAGCACGAAGCCACACACCAGCCCAGATAGACACTCCAGCCACTCTGGAGGAGGtccaagaggaggaagaggaggaggctgCTGAGCCAGACACCACGCCGCACCAGGAACGAGAGAGGaCTCCATCTGTGTCATCAGCAGCATCATCTTGCTCAAGCGTTGATGAGAGACTCTGAGAAGTCACCAATGAGAAATCATTTCCTGTCAAGACTTTTTCTGTCTCCCGTCAGCCTTTGCACCATGCTGGATAATGCAGGTATCTCTGCTCAAGAACTCTGATCAAACTTAATACATTTCTATGACAGACGCTGGTTTTAGGTATCAATGCAAATCGGTTGAAAATAGCAATAAATAGCCATTAATGTATTGATCAGTTAGATAGCACTGTCGTCCAACCAGCGTATGGATCAGTATAATCTCATTACGAACACCTGCAATGTAGACCGAGAACACTAGTAATGCCAGTTCAATGTGTTTAACTGGAACAGTAACCATAGTGAGAGAGGCCTACTGTACTACACCTTAATAATAATGCTGTCTTTTAAATATCATTAAAAGgatcaaatacatttgatttgttttacccAAAGA
>XM_021597811.2
gagagagagagagagagaggggaggaatgaaATGAGAGTgtgagagcaagagcgagagagagagaaattgggaaGAAACAGAGATACCACCTTACCTTAACAAAAGAAGATCCTCCtctggactgggactgggacgaGAGACAGGAGACATGGCTGGGTACAGGCCGAGGGTGATAGTGCTGAGTAAGAAGCCAGGTCAAAGTTTTGGCTTCCTCTTGAGGGTGGAGCAAGGAGAGGATGGTCACCTGATCAGGAACCTGGAGAGGGGCAGCCCGGCCAAGCTGGTGGGTTTGAAGGACGGAGACCGCATCCTCCGGGTCAACGGGACCTATGTGGACGAGATGGACCACACacggGTAGTGGACCTGGTGAAGGAGAGTGGTACATCGGTCACCTTCCACGTTCTGGATGTGGCATCCTACAAGCAGGCTAAGACTGAGGGGGTGGACCTGTCTGACCAACACGCCACACCCACTCAGCACGCCATGAACGGGGTGGGAGGAGGGGCGCCCAAACCCAAACTCTGCTACCTGGCCAAGTCCAGCGGGGGCTACGGCTTCTCTTTGCGCTCTATCAAAGATGAGAGGGGTGACGTGGGCATGTTCATGACAGAGGTGGCTCCAGGGGGTGTGGCCGGGAGGGCAGGGGTCAAGACCAACGACCGCCTGATAGAGGTCAACGGGGAGAACACGGAGAACGCCACTCATGACCAGATAATTGAAAAGATCAAGGCATCAGGCAGCAGCGTCATGTTCCTATTGGTGGATGAGGACACAGACAGGTTCTACAAGATAAAACGCATCAGGATAGGGGCGGGGCTAGCCACAGCAAAGCTCCTCCCACTGAAGCCACGCATCGCAGACTTGGTCAAAGGATCAGACGGCTATGGATACTTCCTAAGGACTGAGCCTAACAAGACagGCCACTTCATCAGGGACATTGACAGGGGTAGCCCAGCTGAGAGGGCGGGATTAAAGGAGATGGACAGGCTGGTTGCCGTGGAGGGtgtggaagtggatggctgcagcCATGAGCAGGTGGTGGACAGGATCAGGCAGTGTGGCAGCAAGTGCTGCCTCCTGGTGGTTGATGAAGACACTGACAAGCTCTACAAGATGGGAGGCGTTTCTCCTCTGTTCTACTTGGAAGAGATTACGGAATCCCTCCTTCCAGCAACCCCTCCACCCAGCTACCCAGAGAGCGTGCCGGCCCCGGTCCCAGACCCTGTTACCACAGACCTCCTCAAGCTGTGCAAGATGGAGAAGACCTCCGCCGGGTACGGCTTCCACCTCAACGGTATACAAGGAGTCTTTGGCCAGTATGTCAAAGAGGTGGTGAAGGGTGGAGCCGCGGACAGGGCTGGTCTAGAGGACGAAGacatggtggtggaggtggacggTGTGAATGTGGAGCAGAGCAGTCACGAGCAAGTGGTGGGGTTGATCCGTAAGAGTGGCAGCTCGCTGGTACTCCTAGTTGCCGGGAAGCAGGCCAACGACCACTTCAAAGCCAAAGGGGTGGCCATCACTCCTCAGCTCTTCATCCCCTCGTCCCAAGCCAGGTCCCCATCCCCAGCCCCGTCCCCGTCCCTAGCACGAAGCCACACACCAGCCCAGATAGACACTCCAGCCACTCTGGAGGAGGtccaagaggaggaagaggaggaggctgCTGAGCCAGACACCACGCCGCACCAGGAACGAGAGAGGaCTCCATCTGTGTCATCAGCAGCATCATCTTGCTCAAGCGTTGATGAGAGACTCTGAGAAGTCACCAATGAGAAATCATTTCCTGTCAAGACTTTTTCTGTCTCCCGTCAGCCTTTGCACCATGCTGGATAATGCAGGTATCTCTGCTCAAGAACTCTGATCAAACTTAATACATTTCTATGACAGACGCTGGTTTTAGGTATCAATGCAAATCGGTTGAAAATAGCAATAAATAGCCATTAATGTATTGATCAGTTAGATAGCACTGTCGTCCAACCAGCGTATGGATCAGTATAATCTCATTACGAACACCTGCAATGTAGACCGAGAACACTAGTAATGCCAGTTCAATGTGTTTAACTGGAACAGTAACCATAGTGAGAGAGGCCTACTGTACTACACCTTAATAATAATGCTGTCTTTTAAATATCATTAAAAGgatcaaatacatttgatttgttttacccAAAGA

Function

NR:

description
Na(+)/H(+) exchange regulatory cofactor NHE-RF3-like

GO: NA

KEGG:

id description
K24057 PDZK1, PDZD1; DZ domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597810.2 False 2184 mRNA 0.53 9 68278572 68292749
XM_021597811.2 True 2181 mRNA 0.53 9 68278572 68292750

Neighbor

gene id symbol gene type direction distance location
LOC110520466 cd200 coding downstream 25331 68227272 ~ 68253241 (-)
si:ch211-214p13.7 NA coding downstream 69898 68206330 ~ 68208674 (-)
nr1i2 nr1i2 coding downstream 130807 68125603 ~ 68147765 (-)
LOC110520458 LOC106586647 coding downstream 361714 67900356 ~ 67916858 (-)
LOC110520455 LOC106586642 coding downstream 397154 67836705 ~ 67881418 (-)
LOC110520470 LOC106586656 coding upstream 162711 68455461 ~ 68460579 (-)
LOC110520471 NA coding upstream 291722 68584472 ~ 68586742 (-)
LOC110520474 LOC106586664 coding upstream 967753 69260503 ~ 69277276 (-)
LOC110520476 LOC106586666 coding upstream 1087717 69380467 ~ 69469698 (-)
LOC110520477 LOC106586672 coding upstream 1303087 69595837 ~ 69614655 (-)
G290137 NA non-coding downstream 9905 68268453 ~ 68268667 (-)
G290064 NA non-coding downstream 53238 68223448 ~ 68225334 (-)
G289985 NA non-coding downstream 184814 68093038 ~ 68093758 (-)
G289841 NA non-coding downstream 221287 68056985 ~ 68057285 (-)
G289836 NA non-coding downstream 228043 68050232 ~ 68050529 (-)
G290154 NA non-coding upstream 14300 68307050 ~ 68307310 (-)
G290155 NA non-coding upstream 14651 68307401 ~ 68307710 (-)
G290163 NA non-coding upstream 25523 68318273 ~ 68318828 (-)
G290190 NA non-coding upstream 72790 68365540 ~ 68366876 (-)
G290189 NA non-coding upstream 75394 68368144 ~ 68370857 (-)
G289653 LOC106607871 other downstream 392340 67883752 ~ 67886232 (-)
G289678 NA other downstream 645079 67626832 ~ 67633493 (-)
G288578 NA other downstream 1435691 66842671 ~ 66842881 (-)
G287112 NA other downstream 2698077 65579791 ~ 65580495 (-)
G290542 NA other upstream 286353 68579103 ~ 68580707 (-)
G290567 NA other upstream 333582 68626332 ~ 68647620 (-)
G290598 NA other upstream 417617 68710367 ~ 68717385 (-)
G290602 NA other upstream 429058 68721808 ~ 68724914 (-)
G290713 LOC106586659 other upstream 553861 68846611 ~ 68850854 (-)

Expression


Co-expression Network