LOC110520470 (LOC106586656)


Basic Information

Item Value
gene id LOC110520470
gene name LOC106586656
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68455461 ~ 68460579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597813.2
atcatcagTGGCAATACCATTTCTAACCCATCAATGTGCTCTccccctcccatccctctccttctaGATGGTATATAAGCCCTGGCTGTGCTCGCAGTACTTCCAGACCACCCAGATCCACTGCAGTAAGAGGATCCCGTGTGGCCAGTACTGTCTGGAGGTGCAGCAGAGGTGTCCCTTTATCCTGCCTGACAACGACGATCTCATCTATGGAGGAAGTCCCAGTTTTATATGCACAGGGCTGCTGGAGGAGTACCCTGGGGGTGTAGAGGCAGAGTGCTGTGATGTCCGGTGGGACTTCAAGATGGAAGCAGACAACAACCGTTCTCGGGGGACCCTCAAAAGAACTCACCCATCCTGTCTTCACCGAAGCTCTCTCAGTTCCTCGGCCGCGTGCAGACTGTGCAACAGCCGGCTCAAACTCTGCCTGCTTGTCCTTGTCCTCCTGCACACTGTTGCCTCCCTCACCGCATCCCACAATGCAACGGGAGTGGGCTTGGGTCTTCCTGCCTCCCTCACCCCTCTGGAGGAGAGTTCCCCCACCAACGAGGAGTGATGGGATGGCTGAGGACCTACGTTGTCATGGCAACAGCATGGCTATGAGGATTTGAAACATCTCTGCCTTGGTCGGGAATGCTAAGTGCTGTGGACTTGACATCTGCAGCCGTCGTGCTTTCTGGGTAATGGAGTCTTTGCTGAGGTTTGGGACTACTTGGAGACATACAAATCaatcaaaacaaacaaacaaacaaacaaagagaAAAAAACCATGACTGTGGTGGGAATGTGGGACAATGCCACAGTCTGACTGTGAAGGCCTCCTCACTGCTGAGTTTCTCTCTGCTCTTTTTTTACACTGTGTTCCTGTTCTGGCTTTTTGTTGCACTGGCTGACTACGGGATAACATTCACTCTCCCTCTTTTTGAATTTCCATCCTTTATGTTTTATGATGTTCCTTCCTTTCTCTTGCACAGGAAAATGTCTCATCGATATAGGATAGGTAACATGTATCAAAAAGCAAagttgtgagtgtgtgcatgcttgtgtgtgtccaCTCTGAAGTCTCCCCTTATTTGGGTTCCCATTCCTAAAGATTTTTTAGATGTAGGAAAGGACTGTAAAATGTTAGTAGTAATTtgttctcatgttctctctcacaGTATCCCTGGTAAAGTTAACACACACCCACATTTCATCAGATTACACTACTGGCCAATCTCTCAATATAGAAGACAACCCCTAGATATACGAATATTCCACTCTGAATTCTGTCCCTACCACACTGTTCATTCTCTATGACATCTTCTCAGTCCAGCACTCAACACAGGAGGTGTGATGTTCTATTTtctgtttattgttttgtctaATCAAGATGTGTAAACTCTATTCTGTACTTGCATGTGGAGGCTCTCTTAAATTATGTGAAATTCACGGCCTTGTTGGTTTGCTTTGCGTAGCCTTAGCCATGCTGTGTTACAGAACACTACTGCACCCCCAAAAGACCACCAGTATGGTATCAGTGTCTTCTGTGTTTCACTGCATTGTTCAGAAAATGTTACTTAAATCTCACATTAAGTAAAGGGCTTATTGCTATGTACATATATTCACACATCAAAGACGTATGGCTTAAGGTATCTCATTTGACACTGCATGCTTAGGGGTACAACTTCAAAGGTAAGCATTTGCTTACAAGGCGGTTCATGCTTTGCTATAGAGAACGGGCAGGTGTAGGACCCAGTATGGAGAATGTTTGAGGAGAAACGTTGGGCGGCAGAGAGGTTGAGAAGCTCAGCGGTAGATGTTAGCATTGCTGTTCGCATAATAGTTAATGATAGCTGGAAGAAAAGGAAATATTTAAGGGCTGTTTATATTCTTTGTCCCGTTTTCTAGATAATGAGCTGATGGATAGGTGAGTCAGGTTCTGATAGGTGGGTCATTGTGAAGTCTGTCTGATGTTTACTTGTTGTCTCACTCATATTCATTACGCATTCACAACCTCCGGGAGAGTTGGGGAATATGACCTGTAAACTCGGAGCAACGAGGTGTGTGCGTTCACGTGCTTTAAAACTGGTTGACACATTAATTCACTAATTAACAGCAAACTAGTTACCTTAACCATAAACCAAAAGTAGAGCTATCGCGCTCATAAACAAATTATAgtgttaaaaatacatttttgtggTTGCATTTAACAGGCAAAATGCTGTCATCGAAGTAATTTCCTTAGGTGACGTCACAGTTCAGAATGTCAGAGGTGTCGGGGTCCAAATCAATACAacaataccttacagtgaaaagtgtacttacaagcccttaaccaacaatgcagttttaataaGAATAAGTgttaaaaaatgatttactaaataagataaagaaaattaacaaaaaaattaaagagcaacaataaatgaacagtagcgaggctatatgcaggggttaccggtacagagtcacttGTGCGGTGGCACAAGTTAAGGTaattaggtaatatgtacatgtactgtaggtagaggtGAAGTTACCATGCatagacaacagagagtagcagcagcgtaaaa
>TU329357
TGTGTTCCTGTTCTGGCTTTTTGTTGCACTGGCTGACTACGGGATAACATTCACTCTCCCTCTTTTTGAATTTCCATCCTTTATGTTTTATGATGTTCCTTCCTTTCTCTTGCACAGGAAAATGTCTCATCGATATAGGATAGGTAACATGTATCAAAAAGCAAagttgtgagtgtgtgcatgcttgtgtgtgtccaCTCTGAAGTCTCCCCTTATTTGGGTTCCCATTCCTAAAGATTTTTTAGATGTAGGAAAGGACTGTAAAATGTTAGTAGTAATTtgttctcatgttctctctcacaGTATCCCTGGTAAAGTTAACACACACCCACATTTCATCAGATTACACTACTGGCCAATCTCTCAATATAGAAGACAACCCCTAGATATACGAATATTCCACTCTGAATTCTGTCCCTACCACACTGTTCATTCTCTATGACATCTTCTCAGTCCAGCACTCAACACAGGAGGTGTGATGTTCTATTTtctgtttattgttttgtctaATCAAGATGTGTAAACTCTATTCTGTACTTGCATGTGGAGGCTCTCTTAAATTATGTGAAATTCACGGCCTTGTTGGTTTGCTTTGCGTAGCCTTAGCCATGCTGTGTTACAGAACACTACTGCACCCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597813.2 False 2561 mRNA 0.44 2 68455461 68460579
TU329357 True 640 lncRNA 0.40 1 68456525 68457164

Neighbor

gene id symbol gene type direction distance location
LOC110520467 LOC106586653 coding downstream 162711 68278572 ~ 68292750 (-)
LOC110520466 cd200 coding downstream 202220 68227272 ~ 68253241 (-)
si:ch211-214p13.7 NA coding downstream 246787 68206330 ~ 68208674 (-)
nr1i2 nr1i2 coding downstream 307696 68125603 ~ 68147765 (-)
LOC110520458 LOC106586647 coding downstream 538603 67900356 ~ 67916858 (-)
LOC110520471 NA coding upstream 123893 68584472 ~ 68586742 (-)
LOC110520474 LOC106586664 coding upstream 799924 69260503 ~ 69277276 (-)
LOC110520476 LOC106586666 coding upstream 919888 69380467 ~ 69469698 (-)
LOC110520477 LOC106586672 coding upstream 1135258 69595837 ~ 69614655 (-)
LOC110520480 ube2al coding upstream 1180687 69641214 ~ 69644739 (-)
G290443 NA non-coding downstream 2679 68451802 ~ 68452782 (-)
G290442 NA non-coding downstream 6404 68448646 ~ 68449057 (-)
G290454 NA non-coding downstream 19383 68435835 ~ 68436078 (-)
G290226 NA non-coding downstream 56094 68398958 ~ 68399367 (-)
G290225 NA non-coding downstream 59219 68396043 ~ 68396242 (-)
G290477 NA non-coding upstream 9979 68470558 ~ 68470784 (-)
G290495 NA non-coding upstream 36656 68497235 ~ 68497484 (-)
G290496 LOC105030512 non-coding upstream 37053 68497632 ~ 68497870 (-)
G290501 NA non-coding upstream 42991 68503570 ~ 68503773 (-)
G290508 NA non-coding upstream 49805 68510384 ~ 68510739 (-)
G289653 LOC106607871 other downstream 569229 67883752 ~ 67886232 (-)
G289678 NA other downstream 821968 67626832 ~ 67633493 (-)
G288578 NA other downstream 1612580 66842671 ~ 66842881 (-)
G287112 NA other downstream 2874966 65579791 ~ 65580495 (-)
G290542 NA other upstream 118524 68579103 ~ 68580707 (-)
G290567 NA other upstream 165753 68626332 ~ 68647620 (-)
G290598 NA other upstream 249788 68710367 ~ 68717385 (-)
G290602 NA other upstream 261229 68721808 ~ 68724914 (-)
G290713 LOC106586659 other upstream 386032 68846611 ~ 68850854 (-)

Expression


Co-expression Network