LOC110520476 (LOC106586666)


Basic Information

Item Value
gene id LOC110520476
gene name LOC106586666
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69380467 ~ 69469698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975027.1
AAAGAGGCTCACAACGTCCAGGGCAAATATGCAACCCAACGCACTGCACAAGCTCTGCTGATAGTCTGTATTTCCTTTAAGAAGAAGAATACGAAGGTTTCAACAAGTGGTCTTTAGTGGACATTCGGGACAGTTGTAGGCCTACATACATTTCCATTGCGTCCCTACGCAATAATGTTCCAGAGTTGCACCCTGGTTTTGTTGGTGGCTCTCTGCTACGCCGTATACCAGACAGAGGCGGAGgggtGCTCTGGGTCATCATGTGAAGGGAAATGTGACTGCAGTGGAGTGAAAGGAGCAAAGGGTGAGCGTGGATTTCCTGGTCTCCAAGGCAACATGGGGTTCCCGGGCATGCAGGGCCATGAGGGACCCGCTGGGCCGATGGGCCCTAAGGGAGAGTATGGCGAGTCGGGAACTCCCGGGATGAAAGGAACACGTGGTCCTAATGGTTTGCCAGGCTTCCCAGGAAACCCAGGGCTTCCGGGCATCCCTGGACAAGACGGCCCCCCTGGATCGCAGGGTATCCCAGGGTGCAATGGAACAAAGgGAGATCGAGGGACAGACGGACAGTCTGGGTTCCCTGGTCTGCAGGGTCCTCCTggtatcCCCGGACTCATGGGAATGAAAggaGATGCAGGTGGTGTTATTGGAGTCATCCCACTGAAAGGAGATAAAGGATTCCCTGGAACACCTGgtttactgGGTCCCAATGGCCCCTCGGGGCCTGAAGGCCCACCAGGAAACCAGGGATCAGATGGACCCAGAGGTTTCCCTGGCCCACCTGGCCCCAAAGGAGAAAAGGGGGACAGGCTGTCTTTCCAGAGTGAGAAGGGAGACAAGGGGCAACAAGGGTTCCGTGGCCCACCTGGCCCCCCTGGCCCCCCCGGACCTCCATCACAGGAAGCGGGAGGAAATGCTGTTTTAAATTACCTCCCAGGACCACCGGGTCAGAGAGGAGAtacaggagacagaggagagaaaGGTTTTTGCATTCCACATCTAAACGGGGTCAAGGGTGAACAAGGGCTACCAGGACCAAGGGGAAAACCTGGCAAAGATGGAGAAAATGGATTAAAGggagagagaggctttcCTGGTGGCCCTGGATACCATGGAACACCGggtgaaaagggagagagaggcccTCCAGCAAATGGTGATGGTGCTCCTGGCTCTCCTGGACCCCCAGGCCTCCCAGGCTTACAAGGAGAAAGAgGTTTCCCTGGTATTCAAGGAGCTCTGGGCCTACCAGGCAGGCACATTGAGGGACCCCCCGGAGAGAAGGGCCGGCCAGGAGAGGTCGGTCAGAAGGGAGACAGAGGTGCAGAAGGGGAGTCTCTCAGAGGAAAGCCTGGACAAGATGGGCTTGTTGGACCCCCTGGTCCTCCCGGACCCCCTGGGGATGAGCCATGTGATCCGGCCCTTGAAAAGGGCCCACCTGGGCCCCCCGGCCCACCTGGACTACAGGGGGAGTTAGGACAGAAAGGTGATCAGGGAGACACGTGTGTGCAGTGCGAAGCCTTCGGCCCACCTGGACTCCCTGGTCCCCAGGGGCCCAAAGGACTGCAAGGTTATCCTGGAGCGGCAGGCAGTAAAGGAGACAAGGGTGTGCCTGGACCTGCTGGGCTTGATGGAAGCCCTgGTAATTCAGGTACTCCTGGGTTGGTAGGTGCTCCAGGAGCCCATGGTGAACCTGGCGACATCTACCTGGCTCCAGGGCTGAAGGGGGACAAAGGTCTGCCTGGTTTCGTTGGCACACGAGGTCTACCTGGTGTAGATGGACTGCCAGGGAAAGAAGGACTAGCAGGCCTGCCTGGATCCAAAGGAgaacctGCCAGAGAGGGCATCAAGGGGGACCGTGGTCTCGATGGGGACCCTGGTTTCTCTGGACCCCCAGGAGAGAGGGGTCCTCCTGGGGTAccagggtttggccggccgggggAGCCTGGAGAGAAGGGTACATCTGGTCAACAAGGCCGACTTGGAATCCCTGGACAACCAGgaGTGAAAGGTGAACCAGGTAAAGATGTGAGCTCACCTGGACCCCAGGGCTCCCCCGGACCTCGAGGACAATCTGGCATCCCTGGACTACAAGGTGACAGAGGACTACAGGGAGACCCTGGAATGCCAGGATTCCCCGGACAGAAAGGTGACTCAGGTGTCCCCGGCATTGGATTCCCAGGACTACCCGGGCCTAAAGGATACTCTGGAGCTCCAGGAGCTCCTGGGTTGCCAGGAGAGCCTGGGAGATCTGGACAGGATGGTTTCTCTGGAAAACCAGGCACACCTGGTCCAAAGGGTGAGCCAGGTCGGGGTCTACCTGGTCCTAAAGGTTCTCAGGGCCCTCCTGGAGAGACAGGTTTTCATGGAGATAAAGGCAACATTGGTCCAACTGGTATTCCTGGACAAGAGGGACACACAGGACCACCTGGAGCTCAGGGAATTCAAGGTGACCCTGGCCCCCCTGGTCAGCATGGTGGCACTGGACCCCCTGGACCCCCTGGAGCAGGAGAACCTGGGGCCCCTGGACCAGTAGGACCCCCTGGAGAGCCAGGCCCCTTTGGTCATGAAGGTGTGAAAGGAGATAAGGGCTTCCCTGGCTCTCCTGGTCTGGACATGCCCGGCCcccagggagagaagggagactcAGGATTCCCTGGACTGTCTGGATCAAAAGGGTTGCCAGGAAGACCTGGCCCGGCTGGCAGAGACGGATTCCCCGGAGACCCAGgCCTCAAGGGAGAGATGGGAGTCATGGGAATGCCTGGAACACCAGGACATCAGGGTTCTGCTGGGAGCCCTGGAACTCCTGGACAGAGAGgcaACCCGGGTGTCTCTGGGCCTAGAGGGGAGTTTGGTGAGCCTGGAcccaaaggagagaggggagagcagggtcTGCAGGGTCCTCCTGGCAACATGAGTGAGCTGAACATGGAGCACATGAAGGGACAGAAAGGAGACAGCGGAGACCCAGGTGACCCTGGACACACCGGAGAGAAGGGTTATCCAGGACAGGCCGGAGTACCTGGTATGCCAGGAAAGGATGGAGAGCCCGGTACACCTGGTCAACCAGGTGAGAAAGGAGACACAGGTGTTCCTGGTGAGCCCGGCAGTACTGGGTATCCTGGAAACAAAGGAAGCATTGGAGAAATGGGATACCCAGGTTCTGTGGGTCCGAAGGGTGCTAAAGGCATTGTGGGCACAACGGGTCACCCAGGGTTCCTGGGTACAGAGGGGGTGAAAGGAGACAAGGGATCAGTCGGTTTGCCAGGTGTCGGACTGCCAGGACCCCCTGGAGAGAAGggtcagtTGGGTCTGACTGGTTTCCCTGGTAACGCAGGAGAGAAGGGTCAGAAGGGAGGAATGGGAGTCCCCGGGATGCCAGGAACACCAGGAACCAAGGGAGACACTGGTTACATTGGTCACCCAGGTCAGCCGGGTCGGCCAGGAGAGAAGGGTGTCGGTGGGCTGCCCGGGTCAACAGGAGAGCCAGGCCAAACAGGTCGACCAGGTGAGCCTGGTCTGCAGGGTCCCCCAGGTCCGACTGGAGAAAAAGGAGAGTCAGGAGTGGACGGCATTCCTGGATcatcaggagacagaggagaccaAGGTTTTCCTGGCAGAGGCTTCCCAGGAACGCCGGGGTCGTCTGGGTTTAAAGGTGATAAGGGTAGTCCAGGTTTCCCAGGTTCCCCAGGTATCCCGGGTATCCCAGGGACCAGGGGAGAGAAGGGTACGGCAGGCTTCCAGGGCTCCCTGGGCCAGCCAGGAGAACAGGGCCACCCAGGACCCGCCATGGAGGGGCCCAAAGGAGACCAAGGAGTGCCAGGAAAGCCTGGAGAACCAGGTACCAGTGGTGTTCCAGGTCCTGCTGGTGTTCCCGGCAGCGCGGGGGGGAAGGGAGACAAGGGAGATCAGGGTGGACAAGGAGTACAGGGCGAGCAGGGCTTAAAGGGAGAACGAGGATACTCTGGACTTCCTgggCAATCTGGCCTTCCAGGTGTTGATGGActgaagggagagatgggactGCAGGGTGTGCCTGGTTTTCCAGGGACAAAGGGTGAATTGGGTGTGTTTGGATTGAAaggagagctgggagacagaggaTTCCCAGGAACTAAAGGTAATGATGGCCCCCCTGGTCCTCCTGGCCTCCACACCTTCATCAAGGGAGAAAGCGGCTTCCCGGGTAGTCAGGGCCCTCAGGGGCCTGTGGGGCCCTCAGGTTTCCCTGGGCTGAAAGGACAGCAAGgtaTGACAGGTATTCAGGGTATTAAAGGTGACGAGGGAAACCCTGGGATTAACGGTCTCCCCGGAGCCAAGGGAGAACCAGGCCTGCTTGGTCCCTCAGGACCGAGAGGGTATCCCGGACCCCCTGGACCTGATGGTGTTCCGGGTCAGGTAGGTCCTCCCGGCCCCTCCTCCATGGAGCATGGTTTCCTGGTAACCAGGCACAGCCAATCGGTGGAGGTTCCACAGTGTCCAGAGGGAACATCGCTGATCTATGATGGATACTCCCTACTCTACATCCAGGGCAATGAGCGTTCCCACGGACAGGACCTGGgtacGGCTGGTAGCTGTCTGAGGAAGTTCAGTCCCATGCCCTTCCTCTTCTGTAACATCAACAACGTCTGTTACTTTGCCTCCCGTAACGACTACTCCTATTGGCTTACCTCCCCTGAGCCCATGCCAATGAACATGGACCCTATCACCGGCCAGGGCATCAGGCCCTTCATCAGcagGTGTTCTGTGTGTGAGGCTCCTGCCATGGTGATAGCAGTACACAGTCAGAATATCATGATCCCATCATGCCCCAATGGCTGGGACTCACTCTGGATTGGCTACTCCTTCGTCATGCATACCAGTGCAGGTGCTGAGGGCTCTGGCCAGGCCCTGGCATCTCCTGGCTCCTGTCTAGAAGAGTTCCGGAGCGCACCCTTTATCGAGTGTCACGGGCGTGGAACCTGCAACTACTACGCCAACTCCTACAGCTTCTGGCTGGCCGCCATCGAGGACAATGAGATGTTTACGAAACCCATACCCACCACGCTAAAGGCAGGAAGTCTTCGGACTCACATTAGCCGTTGCCAGGTGTGCATGAAGAGGACATAGGCCTCGCCACTGACCTCTCTGTGACCCTTAACCTCCCACCACAACCCGTGACCCCACCAATCTTTCCGCGGTGTGGCTTGACTTCTTGTTATTGATCAAAGGATGGTGCTATTTCACTGTGtgtgagggaggagagtgacagagacacacagacaacaAAATATCCAGAGATCCCCGAAAgagcagatcacacacacacacacacaccggagacCAAGCCATAACACCAACCGGCCCTTCGCTCCATCATGCAGAACTCTTTACTAACATTATCACAACGTTTCTCTAATGAATGGCGCCCAGTTTACGACTGCACTGAGTACACCCCCCCTCCCCATTTGTAAACGGGCGTCCATTTTGAAAGGGGGTGTTTGTGCAAGTCAGGTGCTATTGAATCTTATCTATTTGCCTTAATATTTTCACTCAATGCCACTGACTTTCAGCTCTGAGTTACCGTTATAGATATTGTTATTGTTCTTCACGTCTTTTATCTTTTTACTCTTTAAATAACACAGTACTAATTTAAGAATGGGAGTTACCACTGGCTACAGATGCTTGTCACAGTGAGAGAGTGTTGCTAGCACACAGGCATAGTGATGGTTATGTTGTAAATATATTGCTTTTCTTTTTCCTACTTAACATAACAGCCACCATAATCTCTATttcaatttgtattttatttatgaaATTTATGAGAATATGTAGAGTGGATTTGAGTTGCCAAATAACCATAAACAATGTGAGATATGAAAGTACAGTATGTTATTCTGGTCCAGCCGGACCCAGGCACTTAAAGTTACAATACTGCGTTTAGCATTACATGTTACATTTAGCATTACATGTTACATTTAGCATTACATATTACATTTAGCATTACATGTTACATTTAGCATTACATGTTACATTTAGCATTACATGTTACATTTAGCATTACATGTTACATTTAGCATTACATGTTACATTTAGCATTACATGTTACATTTAGCAGCACATGTTACATTTAGCAGTACATGCTACATTTAGCATTACATGCTACAGTTAGCAGTACATGTTACATTAAGCATACATCAGTCCTGCCGCTATAGGCCAAGACCTCCAGTGCCTTGTGGTTCACTATGAAAAACAGAACAGTGAAATAAAGCTGTGGCAACATcactgaaa

Function

NR:

description
collagen alpha-1(IV) chain-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06237 COL4A; collagen type IV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975027.1 True 6276 mRNA 0.55 48 69380467 69469698

Neighbor

gene id symbol gene type direction distance location
LOC110520474 LOC106586664 coding downstream 103191 69260503 ~ 69277276 (-)
LOC110520471 NA coding downstream 793725 68584472 ~ 68586742 (-)
LOC110520470 LOC106586656 coding downstream 919888 68455461 ~ 68460579 (-)
LOC110520467 LOC106586653 coding downstream 1087717 68278572 ~ 68292750 (-)
LOC110520466 cd200 coding downstream 1127226 68227272 ~ 68253241 (-)
LOC110520477 LOC106586672 coding upstream 126139 69595837 ~ 69614655 (-)
LOC110520480 ube2al coding upstream 171568 69641214 ~ 69644739 (-)
ankrd10b LOC106586677 coding upstream 179839 69649537 ~ 69675010 (-)
otc otc coding upstream 228767 69698465 ~ 69709169 (-)
sytl5 sytl5 coding upstream 305934 69775632 ~ 69861001 (-)
G291540 NA non-coding downstream 1236 69377943 ~ 69379231 (-)
G291542 NA non-coding downstream 2709 69374577 ~ 69377758 (-)
G291572 NA non-coding downstream 29425 69345002 ~ 69351042 (-)
G291560 NA non-coding downstream 55347 69324347 ~ 69325120 (-)
G291549 NA non-coding downstream 73831 69306427 ~ 69306636 (-)
G291622 NA non-coding upstream 10811 69480509 ~ 69480944 (-)
G291631 NA non-coding upstream 29882 69499580 ~ 69507947 (-)
G291652 NA non-coding upstream 53057 69522755 ~ 69599709 (-)
G291661 col4a2 non-coding upstream 121461 69591159 ~ 69594078 (-)
G291662 LOC106586674 non-coding upstream 170135 69639833 ~ 69640694 (-)
G291138 NA other downstream 123923 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 529613 68846611 ~ 68850854 (-)
G290602 NA other downstream 655553 68721808 ~ 68724914 (-)
G290598 NA other downstream 663082 68710367 ~ 68717385 (-)
G290567 NA other downstream 732847 68626332 ~ 68647620 (-)
G291901 LOC106586687 other upstream 510648 69980346 ~ 69996605 (-)
G291977 NA other upstream 637842 70107540 ~ 70107950 (-)
G292753 NA other upstream 1250338 70720036 ~ 70720591 (-)
G292919 NA other upstream 1557921 71027619 ~ 71040152 (-)
G293984 NA other upstream 2433616 71903314 ~ 71903908 (-)

Expression


Co-expression Network