LOC110520477 (LOC106586672)


Basic Information

Item Value
gene id LOC110520477
gene name LOC106586672
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69595837 ~ 69614655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597820.2
cctgctgcgtaaattctcctaaTATTGTATGTAAAGATAAATCTGACATCAATTTtacaaaagctggatcccttctagccatgaccctTCAAGCTTTTAAATCAACGTCCGGTTTCATCACAATTTTTGAAGTTCACTATCAACAAGTggacgagagagagggaagagctgTGGTCGTCTAACTTGAAGTGTTTGTTATATCGAGATGTTGATTGTATAATCGCTTGAATTATATCGAACACCCAGGACGATTTCAGTGGGTTTTAATCGGTTGATGTCAAGATGACAATTGCACTTTATCTGTAAACTAGTGCTTTTAAATGAAAGTGAAGTACAGCATCGAGTGTGTCTCTGCTAGACCGCTGAGGAGGTTTGCCAAGCGGCGTGGGTCAAGAACCATGCCCGAACTTTCCAAGATGAGGAAGCCTGACGTCAAAGTTGTCATTCTGGGCGACATGAACGTTGGGAAGACCTCGCTGCTTCACAGGTACACGGAGAAGAAATTTAAAGACACCATCAGCACCGTCGGAGGGGCGTTTTTCCTCAAACAGTGGGGACCCTACAATATCTCCATTTGGGACACTGCTGGTCGGGAGCAGTTCCACGGGCTGGGCTCCATGTACTGCCGGGGCGCTGCTGCTGTCATCCTCACCTACGACGTAACCAACTGGCAGAGTCTGGCTGAGCTGGAGGAGCGCTTCCTGTCCCTGACCGACACTGCCAATCACGACTGCATCTACGCCATCGTGGGCAACAAGGCCGACCTCACAGACCTCCAGGCACAGGTGGGAGCCACCCAAGACGGCCTAACcgaggaccagggagaggaggacggggAGAGGCCCAGGGTGCCTTCTGCCTGCCCCACCCCTCCAGCCTCTCCAGTCTCCCTGTCGGGGGTGTCGGTCAACAAGCAGGTGAGCCGGGAGGATGCAGTGGCGTTGTATGGGAGGATCCTGAGATACAAGGGTATGGAGGAGACTAACAGCCTGCCTGCTGACAAGATGTGCTTTGAGACCAGTGCTAAGACGGGCTACAACGTGGACCCTGAGGCGCTGTTTGACATGGTGCTGCCCTCCATCATCAGgaagaggactgagagagagggatcacCCACCGTGGACCTGGATGAGTGCATCGGGGCAGGGAAACGGCCAAGGACCGCCTGCTGCTAGGGACTACCGAGTTTTAGACTGATCGTAAAGAGGAGTTTTCATGCCATCTCCATGTTGCTCTCCAAAAAGATTTGTCAGCATTGACCGATTTTTGATACACATACTTTCAAGCAATCaatcaaacatattttttttcttccaatgAGATGCCAAGGATTGTTATGGAGTAAGAAGGAGTTGGATCTCTGAGGCTCTGATATGCATGTAATTGAGTTCTGGCCAAAATGGTGTGTAGTTTGTAAAATGGACTGTTTAGAAATCAATCACATATGATTATTGTCTTGAATGAGAATGTCACATGCCTTTTTGTTCAACAGCACGAATTGTTTGACTACCAGGGTGGGCACATTTGAATTGTGTAAAATTAATCTTATTGTAAGgatgtttttaaatgtttgttaAACAATCAGCTTTGTTTGCATTTGTACGTTCTGTTGCATGTTCATTTTTATtacatccttttttttttttcatttgcaCCTGATCTACACTGGACAATGTGCATTTATATGGAAGACATTTTAAACGTGCTTGATATTTTCAAAGATGATACGATAATAAAGATTCTCATTTTGAAATTG

Function

NR:

description
ras-related protein Rab-20-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07911 RAB20; Ras-related protein Rab-20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597820.2 True 1756 mRNA 0.46 3 69595837 69614655

Neighbor

gene id symbol gene type direction distance location
LOC110520476 LOC106586666 coding downstream 126139 69380467 ~ 69469698 (-)
LOC110520474 LOC106586664 coding downstream 318561 69260503 ~ 69277276 (-)
LOC110520471 NA coding downstream 1009095 68584472 ~ 68586742 (-)
LOC110520470 LOC106586656 coding downstream 1135258 68455461 ~ 68460579 (-)
LOC110520467 LOC106586653 coding downstream 1303087 68278572 ~ 68292750 (-)
LOC110520480 ube2al coding upstream 26611 69641214 ~ 69644739 (-)
ankrd10b LOC106586677 coding upstream 34882 69649537 ~ 69675010 (-)
otc otc coding upstream 83810 69698465 ~ 69709169 (-)
sytl5 sytl5 coding upstream 160977 69775632 ~ 69861001 (-)
xk xk coding upstream 261267 69871658 ~ 69903855 (-)
G291661 col4a2 non-coding downstream 1759 69591159 ~ 69594078 (-)
G291631 NA non-coding downstream 87890 69499580 ~ 69507947 (-)
G291622 NA non-coding downstream 114893 69480509 ~ 69480944 (-)
G291604 NA non-coding downstream 156262 69439163 ~ 69439575 (-)
G291540 NA non-coding downstream 216606 69377943 ~ 69379231 (-)
G291662 LOC106586674 non-coding upstream 25178 69639833 ~ 69640694 (-)
G291749 NA non-coding upstream 99575 69714230 ~ 69716414 (-)
G291755 NA non-coding upstream 113578 69728233 ~ 69729053 (-)
G291760 NA non-coding upstream 118665 69733320 ~ 69733532 (-)
G291138 NA other downstream 339293 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 744983 68846611 ~ 68850854 (-)
G290602 NA other downstream 870923 68721808 ~ 68724914 (-)
G290598 NA other downstream 878452 68710367 ~ 68717385 (-)
G290567 NA other downstream 948217 68626332 ~ 68647620 (-)
G291901 LOC106586687 other upstream 365691 69980346 ~ 69996605 (-)
G291977 NA other upstream 492885 70107540 ~ 70107950 (-)
G292753 NA other upstream 1105381 70720036 ~ 70720591 (-)
G292919 NA other upstream 1412964 71027619 ~ 71040152 (-)
G293984 NA other upstream 2288659 71903314 ~ 71903908 (-)

Expression


Co-expression Network