Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110520480 |
| gene name | ube2al |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 69641214 ~ 69644739 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ube2al | Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to be part of HULC complex. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Nascimento type. Orthologous to human UBE2A (ubiquitin conjugating enzyme E2 A). |
| description |
|---|
| ubiquitin-conjugating enzyme E2 A-like isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0006301 | postreplication repair | biological_process |
| GO:0060135 | maternal process involved in female pregnancy | biological_process |
| GO:0033522 | histone H2A ubiquitination | biological_process |
| GO:0009411 | response to UV | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0070936 | protein K48-linked ubiquitination | biological_process |
| GO:0070979 | protein K11-linked ubiquitination | biological_process |
| GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I | biological_process |
| GO:0001701 | in utero embryonic development | biological_process |
| GO:0001741 | XY body | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0033503 | HULC complex | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0031625 | ubiquitin protein ligase binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021597827.2 | False | 1328 | mRNA | 0.42 | 6 | 69641266 | 69644739 |
| TU330704 | True | 1232 | lncRNA | 0.42 | 5 | 69641214 | 69644698 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520477 | LOC106586672 | coding | downstream | 26611 | 69595837 ~ 69614655 (-) |
| LOC110520476 | LOC106586666 | coding | downstream | 171568 | 69380467 ~ 69469698 (-) |
| LOC110520474 | LOC106586664 | coding | downstream | 363990 | 69260503 ~ 69277276 (-) |
| LOC110520471 | NA | coding | downstream | 1054524 | 68584472 ~ 68586742 (-) |
| LOC110520470 | LOC106586656 | coding | downstream | 1180687 | 68455461 ~ 68460579 (-) |
| ankrd10b | LOC106586677 | coding | upstream | 4798 | 69649537 ~ 69675010 (-) |
| otc | otc | coding | upstream | 53726 | 69698465 ~ 69709169 (-) |
| sytl5 | sytl5 | coding | upstream | 130893 | 69775632 ~ 69861001 (-) |
| xk | xk | coding | upstream | 231183 | 69871658 ~ 69903855 (-) |
| LOC110520487 | NA | coding | upstream | 248212 | 69892951 ~ 69895131 (-) |
| G291662 | LOC106586674 | non-coding | downstream | 572 | 69639833 ~ 69640694 (-) |
| G291652 | NA | non-coding | downstream | 41557 | 69522755 ~ 69599709 (-) |
| G291661 | col4a2 | non-coding | downstream | 47188 | 69591159 ~ 69594078 (-) |
| G291631 | NA | non-coding | downstream | 133319 | 69499580 ~ 69507947 (-) |
| G291622 | NA | non-coding | downstream | 160322 | 69480509 ~ 69480944 (-) |
| G291749 | NA | non-coding | upstream | 69491 | 69714230 ~ 69716414 (-) |
| G291755 | NA | non-coding | upstream | 83494 | 69728233 ~ 69729053 (-) |
| G291760 | NA | non-coding | upstream | 88581 | 69733320 ~ 69733532 (-) |
| G291763 | LOC106581772 | non-coding | upstream | 93770 | 69738509 ~ 69738762 (-) |
| G291764 | NA | non-coding | upstream | 96477 | 69741216 ~ 69741664 (-) |
| G291138 | NA | other | downstream | 384722 | 69256005 ~ 69256544 (-) |
| G290713 | LOC106586659 | other | downstream | 790412 | 68846611 ~ 68850854 (-) |
| G290602 | NA | other | downstream | 916352 | 68721808 ~ 68724914 (-) |
| G290598 | NA | other | downstream | 923881 | 68710367 ~ 68717385 (-) |
| G290567 | NA | other | downstream | 993646 | 68626332 ~ 68647620 (-) |
| G291901 | LOC106586687 | other | upstream | 335607 | 69980346 ~ 69996605 (-) |
| G291977 | NA | other | upstream | 462801 | 70107540 ~ 70107950 (-) |
| G292753 | NA | other | upstream | 1075297 | 70720036 ~ 70720591 (-) |
| G292919 | NA | other | upstream | 1382880 | 71027619 ~ 71040152 (-) |
| G293984 | NA | other | upstream | 2258575 | 71903314 ~ 71903908 (-) |
