otc (otc)


Basic Information

Item Value
gene id otc
gene name otc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69698465 ~ 69709169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975031.1
GAGTGGGCAAAAACGGTGAAGGAGGAGCGCCCCACATCGGACAGTAATCAGCACAATTCCGGAGAAGAAAAAAAGTTAACCTACCCAATCTATGTGCGATATTTGGTGAGACGAAACCCCACCCACTCTAGTGGATGCAGGCAACAACACACACATGCTGTTTTCACTTttttcattacattttattttctttCAGATATCGATTTATAAAATTATAGTAGTTTAATCTGTCATGACAACAAAAATACTTGCCATGAAGAATTCAGTGTTCTACGGACTGAAGACTCTCCAAAGCATCCATGCGAGGAATTTTAGCATTGGAGCACTAGCTCTGGGTCCGGTCAACCTCAAGGGTCGCAGTTTCCTGACTTTAAAAGATTTCAGCTCAGATGAGATCAAACATCTTCTATGGGTGTCAGGTGACCTAAAACACAGGATCAAACATGAAAAACAGTACCTTCCTCTTCTTCAAGGGAAGTCAATTGCCATGATATTTGAGAAGAGGAGCACCAGAACTAGAATGTCCACAGAAACAGGTTTTTCTCTGCTGGGAGGACACCCCTGTTTCCTCACGTCTCAGGACATCCACCTGGGAGTGAACGAGAGCAGCACAGACACAGCCAGggttcTCTCTGGGCTGTCAGACATAGTCCTGGCACGGGTGAACAGCCACACTACTCTGGAGGAGCTGGTGAAGGATGCCTCCATCCCCATCATCAACGGCCTGTCTGACCTCTACCACCCCATCCAGATCCTCGCTGACTTCCTCACCCTGCAGGAGCATTATGGTTCGTTGAGTGGGCTGACTATAAGCTGGATCGGAGATGGAAACAACGTGCTGCACTCCTTCATGATGACCGCAGCCAAACTGGGTGTCCATCTTAGAGTCGCCACGCCCAAGGGTTATGACCCAGACAGCAGCATCATTCAGGAGGCACAGAGACTCTCCAAACAGCATGGGACCCAGTTTCTCCTGACCTCTGACCCAGTGGAGGCAGCTCGAGGCAGTAACGTCCTGGTGACAGACACCTGGGTCAGCATGGGCCAGGAGGAGGAAAAGAAACAGAGGATCAAGGACTTCCTTGGCTACCAGATCACCATGCAGACAGGAAGTGTGGCAAAGCCAGACTGGACCTTCCTTCACTGTCTCCCACGGAAACAAGAAGAGGTGGAcgaccaggtgttctactcccctcgCTCACTTGTCTTCCCTGAGGCTGAGAACAGGAAGTGGACCATCATGGGTCTGATGGTCTCTCTGCTGACTGACTACTCCCCCCAGATCCCCATGCCCAGATTCTAACTCTATCCCTACTTGCCAAAGGTATCCTAAGTTAACAGTTTTGTAATACTACAAAACAGCGCTCGGTCAAGTACTTGATTGACTTTGTAGTCTGCCAGGTACATTGGAGCCTGTTTTAAAAGTGCAAACTTAAAATGTGCACTTAATGCATGAAagtattttacaaatgtatttgAACCAGGACTGAATCTGAGAGAATAAAAGCTTGTTTCTTTGTATTGGACGTGTGATTTGTATACACAATTCTAGTTTAAGATATTAGGAATTGATTTTGGGGttacaaacaaataaataaaagtacCTCAAAATGAA
>XM_036975032.1
ATTGCTGCTCACGTTGTGGTTCACACCAAACACGTAGTGACGTGAGTGGGCAAAAACGGTGAAGGAGGAGCGCCCCACATCGGACAGTAATCAGCACAATTCCGGAGAAGAAAAAAAGTTAACCTACCCAATCTATGTGCGATATTTGATATCGATTTATAAAATTATAGTAGTTTAATCTGTCATGACAACAAAAATACTTGCCATGAAGAATTCAGTGTTCTACGGACTGAAGACTCTCCAAAGCATCCATGCGAGGAATTTTAGCATTGGAGCACTAGCTCTGGGTCCGGTCAACCTCAAGGGTCGCAGTTTCCTGACTTTAAAAGATTTCAGCTCAGATGAGATCAAACATCTTCTATGGGTGTCAGGTGACCTAAAACACAGGATCAAACATGAAAAACAGTACCTTCCTCTTCTTCAAGGGAAGTCAATTGCCATGATATTTGAGAAGAGGAGCACCAGAACTAGAATGTCCACAGAAACAGGTTTTTCTCTGCTGGGAGGACACCCCTGTTTCCTCACGTCTCAGGACATCCACCTGGGAGTGAACGAGAGCAGCACAGACACAGCCAGggttcTCTCTGGGCTGTCAGACATAGTCCTGGCACGGGTGAACAGCCACACTACTCTGGAGGAGCTGGTGAAGGATGCCTCCATCCCCATCATCAACGGCCTGTCTGACCTCTACCACCCCATCCAGATCCTCGCTGACTTCCTCACCCTGCAGGAGCATTATGGTTCGTTGAGTGGGCTGACTATAAGCTGGATCGGAGATGGAAACAACGTGCTGCACTCCTTCATGATGACCGCAGCCAAACTGGGTGTCCATCTTAGAGTCGCCACGCCCAAGGGTTATGACCCAGACAGCAGCATCATTCAGGAGGCACAGAGACTCTCCAAACAGCATGGGACCCAGTTTCTCCTGACCTCTGACCCAGTGGAGGCAGCTCGAGGCAGTAACGTCCTGGTGACAGACACCTGGGTCAGCATGGGCCAGGAGGAGGAAAAGAAACAGAGGATCAAGGACTTCCTTGGCTACCAGATCACCATGCAGACAGGAAGTGTGGCAAAGCCAGACTGGACCTTCCTTCACTGTCTCCCACGGAAACAAGAAGAGGTGGAcgaccaggtgttctactcccctcgCTCACTTGTCTTCCCTGAGGCTGAGAACAGGAAGTGGACCATCATGGGTCTGATGGTCTCTCTGCTGACTGACTACTCCCCCCAGATCCCCATGCCCAGATTCTAACTCTATCCCTACTTGCCAAAGGTATCCTAAGTTAACAGTTTTGTAATACTACAAAACAGCGCTCGGTCAAGTACTTGATTGACTTTGTAGTCTGCCAGGTACATTGGAGCCTGTTTTAAAAGTGCAAACTTAAAATGTGCACTTAATGCATGAAagtattttacaaatgtatttgAACCAGGACTGAATCTGAGAGAATAAAAGCTTGTTTCTTTGTA

Function

symbol description
otc Predicted to enable ornithine carbamoyltransferase activity. Predicted to be involved in arginine biosynthetic process via ornithine and citrulline biosynthetic process. Predicted to act upstream of or within cellular amino acid metabolic process and urea cycle. Predicted to be active in mitochondrion. Is expressed in ball; brain; liver; and muscle. Human ortholog(s) of this gene implicated in ornithine carbamoyltransferase deficiency. Orthologous to human OTC (ornithine transcarbamylase).

NR:

description
ornithine carbamoyltransferase, mitochondrial

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0016743 carboxyl- or carbamoyltransferase activity molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
K00611 OTC, argF, argI; ornithine carbamoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975031.1 False 1615 mRNA 0.47 10 69698465 69709126
XM_036975032.1 True 1473 mRNA 0.48 11 69698559 69709169

Neighbor

gene id symbol gene type direction distance location
ankrd10b LOC106586677 coding downstream 23455 69649537 ~ 69675010 (-)
LOC110520480 ube2al coding downstream 53726 69641214 ~ 69644739 (-)
LOC110520477 LOC106586672 coding downstream 83810 69595837 ~ 69614655 (-)
LOC110520476 LOC106586666 coding downstream 228767 69380467 ~ 69469698 (-)
LOC110520474 LOC106586664 coding downstream 421189 69260503 ~ 69277276 (-)
sytl5 sytl5 coding upstream 66463 69775632 ~ 69861001 (-)
xk xk coding upstream 166753 69871658 ~ 69903855 (-)
LOC110520487 NA coding upstream 183782 69892951 ~ 69895131 (-)
LOC110504590 lancl3 coding upstream 198136 69907305 ~ 69911161 (-)
asb11 LOC106586685 coding upstream 218492 69927661 ~ 69933360 (-)
G291662 LOC106586674 non-coding downstream 57771 69639833 ~ 69640694 (-)
G291652 NA non-coding downstream 98756 69522755 ~ 69599709 (-)
G291661 col4a2 non-coding downstream 104387 69591159 ~ 69594078 (-)
G291631 NA non-coding downstream 190518 69499580 ~ 69507947 (-)
G291749 NA non-coding upstream 5061 69714230 ~ 69716414 (-)
G291755 NA non-coding upstream 19064 69728233 ~ 69729053 (-)
G291760 NA non-coding upstream 24151 69733320 ~ 69733532 (-)
G291763 LOC106581772 non-coding upstream 29340 69738509 ~ 69738762 (-)
G291764 NA non-coding upstream 32047 69741216 ~ 69741664 (-)
G291138 NA other downstream 441921 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 847611 68846611 ~ 68850854 (-)
G290602 NA other downstream 973551 68721808 ~ 68724914 (-)
G290598 NA other downstream 981080 68710367 ~ 68717385 (-)
G290567 NA other downstream 1050845 68626332 ~ 68647620 (-)
G291901 LOC106586687 other upstream 271177 69980346 ~ 69996605 (-)
G291977 NA other upstream 398371 70107540 ~ 70107950 (-)
G292753 NA other upstream 1010867 70720036 ~ 70720591 (-)
G292919 NA other upstream 1318450 71027619 ~ 71040152 (-)
G293984 NA other upstream 2194145 71903314 ~ 71903908 (-)

Expression


Co-expression Network