LOC110520517 (LOC106586722)


Basic Information

Item Value
gene id LOC110520517
gene name LOC106586722
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71708482 ~ 71716359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975076.1
gagaaagggggagagagagagagagcatgagtgagtgagtgggaggcGTCTCTGAGGTGGAATATGTAAAAAGTCTAAACAGCAAGTCCTCAAAGCTCGAGGACAGACGGGAGCTAGTATAAATGTGCTGCTGTTCGCGCGGGGGTAATAGGGGCCAAAAaacaccctccccctctctggatGTAAGCGCGCCACTGGCCATGGCCACTCTGGAGGGCTGTCATTGTCAGGGCGCCGGGGGGCAAAACAATAACAACAGCATCCTGTACAACATACTGAAGAACGACAGCCTCACGACCACCGAGGAACcaacatcacaaccacaacaCAGACAGCAGCACCAAGTGCTCAAggtctcctcctgctcctcttcttCGAGGTTCGAGCTTAGGCAGCAACAGGCTTGCTCTTGCGGTTCCTCGCTGCGACGGGGGTCTCTCCGGTCCCCCCAGGTGACCTGCAAAGCCGCATCGGCGGTCCTCATGAAGACTCTGCGATTTGTAAAGAACGTGCCGTGTTTCCGCGAGCTTCCCGAGGATGACCAGCTGCTGCTCGTTCGGAACGGTTGGGTGCCGCTGCTTGTGCTGGGCCTCGCGCAGGACCGGGTGGACTTCGAGACCACGGAGACCGCGGAACCTAGCATGTTGCTGCGGATCCTGACCGGCGGCTGTGTCAGCCAAGGCGGCTTAATGGACAGACAGGTTGAGCCGGAGCAGAGCGCGGGAACACCCGGGGTCTCTCTCGCGGATATCCAGGGCATCAAAGCGTTCCTGAAAAAGTGTTGGGGTTTAGACATCAGTACCAAGGAATATGCCTACCTCAAAGGAGCCGTGCTCTTCAACTCAGaTCTCCCTGGTCTGTGCTACCTCAACTACATCCAGTCACTGCGGAGCGAGGCACACCAGGCTCTCAACGAGTATGTGAAGCTGATCCACCGGGACGACGCCACGCGCTTTGCCAAGCTGCTCATCGCCCTGGCCATGCTGAGGGCCATCAGCCCCCCGGTGGTGGCACAGCTCTTCTTCAAGCCCATCATTGGAGCCGTCAATATGGAGGAGGTCCTGCTGGAGATGTTTTATGGGAAGTAGAGGCTTTCTATggtcctgtccagaaacaacccctagatATAGCCCCCAAGTCCTTCTCTTAGTCCTTACTCCCTAGGCAATTTCACCTATTCCCTACCCACTAGAAACGTGACCTTGCCCTAGACTCTCCACCCCCATTTCCCCACTTCCGCTAGCCCCTAGCTCCTATTGGATAGTAATAAGCAAAAACATGCCCAATACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTGTACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAACGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTGTACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAACGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTGCCTTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCTTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTGTACAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAAGATGATAGCTCCATCTTACCCTCCGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTGCCTTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTACCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCCCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCCCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTACCCTCCGGTTGGCTATAAAGGAACAATATGATTGCTCCATCTTGCCCTCCGGTTGGCTATAAATGTTTTTTTCGCTATATTACATCtatcaaatcctctcagatcaATATCTGTGGGGTTTATTCTGGACTGGCCCTTTCCATCGAACGGACAGAAGAACACATCTGTAGTTCTAGTAGAACTAACTAACTGTTAACCAACCGTTTGATCTGAATGGACCGTTGAACAGAAGGACAGACAAAGGaagagatgtgtgtgttttgttaaagatgttttggacactggttGATTAAGAACAGTGGGGGTGAAGGGGGTGTTGGGGGCAGGCTGATGATCAGCCTGTAACTTTCTTTTtatataaaactatttttctATCATAAAAGTATTCTCTGAATTGCTTTGCCGTGCTTGTGTCAGGTGAGTGGTGCTCAAACTGTCTCTATGGTGATCAGAAAGGCGTAGGATGATGTtgcccctggacactgatctaaggtcagagTGGAGTTTTACCCCCTAACGATTAAGGTTACGGGTAAAAtgttcctagatctgtgcctaagggcAACATCTACCCAGACAGATCAGAAAACCCAATGTTCCTTTTCAGTAACTATGGTGGATTATGTGTTCTGAATAAAGTTTAATGTCTGTTCACAGTTCGCTGCTCCCACATGCGATCTTTAATTCAACACGGGTCTGAATTGGGAGCAGCAAACATGGAGCGGACATGACCTTTTTTCCACA
>TU333074
ACAGACAGGTTGAGCCGGAGCAGAGCGCGGGAACACCCGGGGTCTCTCTCGCGGATATCCAGGGCATCAAAGCGTTCCTGAAAAAGTGTTGGGGTTTAGACATCAGTACCAAGGAATATGCCTACCTCAAAGGAGCCGTGCTCTTCAACTCAGaTCTCCCTGGTCTGTGCTACCTCAACTACATCCAGTCACTGCGGAGCGAGGCACACCAGGCTCTCAACGAGTATGTGAAGCTGATCCACCGGGACGACGCCACGCGCTTTGCCAAGCTGCTCATCGCCCTGGCCATGCTGAGGGCCATCAGCCCCCCGGTGGTGGCACAGCTCTTCTTCAAGCCCATCATTGGAGCCGTCAATATGGAGGAGGTCCTGCTGGAGATGTTTTATGGGAAGTAGAGGCTTTCTATggtcctgtccagaaacaacccctagatATAGCCCCCAAGTCCTTCTCTTAGTCCTTACTCCCTAGGCAATTTCACCTATTCCCTACCCACTAGAAACGTGACCTTGCCCTAGACTCTCCACCCCCATTTCCCCACTTCCGCTAGCCCCTAGCTCCTATTGGATAGTAATAAGCAAAAACATGCCCAATACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTGTACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAACGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTGTACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAACGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTGCCTTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCTTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTGTACAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAAGATGATAGCTCCATCTTACCCTCCGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTGCCTTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTACCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCCCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCCCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTACCCTCCGGTTGGCTATAAAGGAACAATATGATTGCTCCATCTTGCCCTCCGGTTGGCTATAAATGTTTTTTTCGCTATATTACATCtatcaaatcctctcagatcaATATCTGTGGGGTTTATTCTGGACTGGCCCTTTCCATCGAACGGACAGAAGAACACATCTGTAGTTCTAGTAGAACTAACTAACTGTTAACCAACCGTTTGATCTGAATGGACCGTTGAACAGAAGGACAGACAAAGGaagagatgtgtgtgttttgttaaagatgttttggacactggt
>TU333076
ACAGACAGGTTGAGCCGGAGCAGAGCGCGGGAACACCCGGGGTCTCTCTCGCGGATATCCAGGGCATCAAAGCGTTCCTGAAAAAGTGTTGGGGTTTAGACATCAGTACCAAGGAATATGCCTACCTCAAAGGAGCCGTGCTCTTCAACTCAGaTCTCCCTGGTCTGTGCTACCTCAACTACATCCAGTCACTGCGGAGCGAGGCACACCAGGCTCTCAACGAGTATGTGAAGCTGATCCACCGGGACGACGCCACGCGCTTTGCCAAGCTGCTCATCGCCCTGGCCATGCTGAGGGCCATCAGCCCCCCGGTGGTGGCACAGCTCTTCTTCAAGCCCATCATTGGAGCCGTCAATATGGAGGAGGTCCTGCTGGAGATGTTTTATGGGAAGTAGAGGCTTTCTATggtcctgtccagaaacaacccctagatATAGCCCCCAAGTCCTTCTCTTAGTCCTTACTCCCTAGGCAATTTCACCTATTCCCTACCCACTAGAAACGTGACCTTGCCCTAGACTCTCCACCCCCATTTCCCCACTTCCGCTAGCCCCTAGCTCCTATTGGATAGTAATAAGCAAAAACATGCCCAATACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTGTACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTGTACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAACGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTGTACAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAAGATGATAGCTCCATCTTACCCTCCGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTGCCTTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTACCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCCCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCCCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTACCCTCCGGTTGGCTATAAAGGAACAATATGATTGCTCCATCTTGCCCTCCGGTTGGCTATAAATGTTTTTTTCGCTATATTACATCtatcaaatcctctcagatcaATATCTGTGGGGTTTATTCTGGACTGGCCCTTTCCATCGAACGGACAGAAGAACACATCTGTAGTTCTAGTAGAACTAACTAACTGTTAACCAACCGTTTGATCTGAATGGACCGTTGAACAGAAGGACAGACAAAGGaagagatgtgtgtgttttgttaaagatgttttggacactggt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975076.1 False 3821 mRNA 0.49 2 71708482 71716359
TU333074 False 2670 lncRNA 0.48 2 71708940 71715666
TU333076 True 1922 lncRNA 0.49 4 71708940 71715666

Neighbor

gene id symbol gene type direction distance location
LOC118964323 NA coding downstream 32311 71672459 ~ 71676171 (-)
cmss1 cmss1 coding downstream 698763 70950681 ~ 71009719 (-)
tmem30c LOC106586702 coding downstream 757883 70945034 ~ 70950599 (-)
LOC118964322 NA coding downstream 800908 70896509 ~ 70907574 (-)
LOC110520512 col8a1 coding downstream 870991 70810604 ~ 70837491 (-)
LOC110504652 LOC106586714 coding upstream 37920 71754279 ~ 71764744 (-)
rnaseh2b rnaseh2b coding upstream 57671 71774030 ~ 71785013 (-)
trim13 LOC106586719 coding upstream 216062 71932421 ~ 71937033 (-)
LOC110505427 LOC106586716 coding upstream 261454 71977813 ~ 71979314 (-)
LOC110520524 NA coding upstream 269961 71986320 ~ 71996884 (-)
G293691 NA non-coding downstream 39145 71669109 ~ 71669337 (-)
G293685 NA non-coding downstream 48849 71659345 ~ 71659633 (-)
G293681 NA non-coding downstream 51649 71656423 ~ 71656833 (-)
G293680 NA non-coding downstream 53500 71654700 ~ 71654982 (-)
G293645 NA non-coding downstream 103243 71604583 ~ 71605239 (-)
G293725 NA non-coding upstream 15220 71731579 ~ 71731796 (-)
G293729 NA non-coding upstream 21920 71738279 ~ 71738586 (-)
G293731 NA non-coding upstream 23175 71739534 ~ 71740039 (-)
G293738 NA non-coding upstream 35031 71751390 ~ 71751794 (-)
G293739 NA non-coding upstream 35553 71751912 ~ 71752323 (-)
G292919 NA other downstream 668330 71027619 ~ 71040152 (-)
G292753 NA other downstream 987891 70720036 ~ 70720591 (-)
G291977 NA other downstream 1600532 70107540 ~ 70107950 (-)
G291901 LOC106586687 other downstream 1711877 69980346 ~ 69996605 (-)
G291138 NA other downstream 2451938 69256005 ~ 69256544 (-)
G293984 NA other upstream 186955 71903314 ~ 71903908 (-)
LOC110504660 LOC106582021 other upstream 456690 72121974 ~ 72206818 (-)
G294451 NA other upstream 854890 72571249 ~ 72575432 (-)
G294697 NA other upstream 1059048 72775407 ~ 72776607 (-)
LOC110520539 mfsd9 other upstream 1159980 72870852 ~ 72881264 (-)

Expression


Co-expression Network