LOC110520529 (LOC106586732)


Basic Information

Item Value
gene id LOC110520529
gene name LOC106586732
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72264378 ~ 72266650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975090.1
CACGCAATGTTTTCCACCATGTTCCCCCAGTGTGTTCCTCTTTCACTAGCTCAGCGTCACCTGACTGAGCGCCATGCAAATCTCTCTGCTTCTAGAACGCCATTGGCCGCTCGTGGCTCATTTAACCGCTGTCAAGGCACATCGTATGGCTGCCGCTTTAACTAACTTCTCAACTCTGACAGGGAAAGTGGCTCAAAGGCGCATTCTGTCAGTGGATGTGAACCAACAACCGGAGAGGAGATAAAGCACGCACAGAACATTTCTGAGATTCCCTCTTTCTTGGATTATTAATTAAGTTTACATTTCACTCATTTTGAGGTATACAATTGTTGATCCCTCGTGTGTACCTGCTCCGCCAGACTCGCGCACCGACTGAATCAGACACATTTTTTTCTGTTGGTAGAAAGTTTGAAAACCAGGTGAATGTATAGCATGATGATGGAGACGGACCTCCATTCCCCTGGACCCCAAACGAACACAAATTCGGGGCAGACGGGACCGAACAGCGGGTCCAAAGCGAATCAGGACCGGGTGAAGCGTCCAATGAACGCGTTCATGGTGTGGTCCCGTGGGCAGCGGAGAAAGATGGCCCAAGAGAACCCCAAAATGCACAACTCCGAGATCAGCAAGCGGCTGGGCGCGGAGTGGAAGGTGATGACGGAAGCGGAGAAGAGACCCTTCATCGATGAAGCGAAGCGGTTACGAGCCATGCACATGAAGGAGCACCCGGATTACAAGTACAGACCAAGACGGAAGACCAAGACCCTGCTGAAAAAGGACAAATACTCTCTGGCTGGTGGCCTGCTCTCTGGGGCTGGCGGTGGTGGAATGGGTCTGGGGGTCGGGGTGGGTTCATCCGGGGTCGGCCAGAGGTTAGAGAGCCCCGGGTGCCACGGGGGCTCCGCCAGCTCAGGCTACACGCACATGAACGGCTGGGCGAACGGTGCGTACTCGGGGCAAGTGGCTGCAGCAGCTGCGGCCGCGGCGATGATGCAGGAGGCGCAGCTAGTTTACAGCCAGCACCCGGGCAGCgggcaccaccaccactcacaccaccaccaccacccgcaCAACCCCCAGCCCATGCACCGCTACGACATGTCGGCGCTCCAGTACAGCCCCATCTCGAACTCTCAGGGCTACATGAGCGCCTCTCCGTCCGGCTACGGCGGGATCACCTACACGCAGCACCAGAGCTCTGGCGTCTCCTCCTCCGCTGCCATGAGCACGTTAGGGTCGCTGGTGAAGTCAGAGCCGAGCGTAAGCCCTCCCGTTAGCACTCACTCCAGGGGCCCTTGCCCCGGAGACTTGAGAGAGATGATAAGCATGTATTTACCGACCGGAGAGCCCGGGGACCCGTCGGTGCAAAGTAGACTCCACGCAATGCCGCAGCATTACCAGAGTGCGACGGCTGCGGTGAACGGAACGGTTCCGTTAACACATATATAGATTAAGCTATTCATAAGACTATGGAAACTGCAGACAGAACACAAAATAACATAAccaaatatttacatattttttttaatgatcaCGGAACTAGGCCTACCTGCATTTTGTACAGAATGTTTATGGTGATGTTGTAAATTAAAGGTAAATTAGCCTATCCATTTCGCCTTTTGGAGTATATACAGTCCCTTACGCACAGGATATGAGTTCAAATATTGGTTGTTGTGTTATAATTTTGACCTTTTTATGAAACCCACTTGTGGTTTAGGGCGATGCCAAATGAATGAATACATTTGGTTAACTATAATCGTATTATTCTGGGTTCACTGTAAGTTATAGAATAATAAGATAACATGGTTTTCATAATCATAAAAAAATGTTCAATATTGATTTTTCCCCATTTGCTAATTACCCAAGCGTTTGTAAACATGTCCGTTTATACTATGTCTATTTATGATCATAATGATCTCTTTTTATTGTAATAATTATTGTAAATTGTGAATAATTTTTAATATTTTAAAGACTGATGCGCAATTGCTATTGTATAATTTACGAGGTGCGATTGCGctgaaatacaattaaaataaatttCACACATATGTTGCTCTGGTTCTACAAAAAAAGTCTTAGCTTGATTATTGTTCACTATCTTCGGTTGCAAATTACAATTTGAGTTGTGTTTAATTTGAAACACACGAACATGATCAAAAAGTCTGACGCAAAGCTACGGATAGGCCACagtaaatgttgttgtttttataagGGGAAAGTGTCTCTGGCAAACCCGTAACATTAAGCACGTTATTAAAAAGCGTATCAACTAA

Function

NR:

description
transcription factor Sox-1a-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975090.1 True 2273 mRNA 0.48 1 72264378 72266650

Neighbor

gene id symbol gene type direction distance location
LOC110504660 LOC106582021 coding downstream 57560 72121974 ~ 72206818 (-)
LOC110520523 LOC106582019 coding downstream 149865 72010695 ~ 72114513 (-)
LOC110520527 LOC106586729 coding downstream 258589 71997354 ~ 72005789 (-)
LOC110520524 NA coding downstream 267494 71986320 ~ 71996884 (-)
LOC110505427 LOC106586716 coding downstream 285064 71977813 ~ 71979314 (-)
LOC110520531 LOC106582025 coding upstream 224198 72490848 ~ 72542128 (-)
LOC110504707 NA coding upstream 510066 72776716 ~ 72782874 (-)
LOC110504714 LOC106586779 coding upstream 524654 72791304 ~ 72838453 (-)
LOC110520539 mfsd9 coding upstream 604202 72870852 ~ 72881264 (-)
fhl2a fhl2 coding upstream 758638 73025288 ~ 73039384 (-)
G294143 NA non-coding downstream 20869 72238098 ~ 72243509 (-)
G294126 NA non-coding downstream 39079 72225057 ~ 72225299 (-)
G294099 NA non-coding downstream 91896 72172079 ~ 72172482 (-)
G294097 NA non-coding downstream 94345 72169702 ~ 72170033 (-)
G294096 NA non-coding downstream 98041 72166106 ~ 72166337 (-)
G294209 NA non-coding upstream 17159 72283809 ~ 72284009 (-)
G294217 NA non-coding upstream 43451 72310101 ~ 72310991 (-)
G294232 NA non-coding upstream 77545 72344195 ~ 72344445 (-)
G294248 NA non-coding upstream 121340 72387990 ~ 72388223 (-)
G294256 NA non-coding upstream 125856 72392506 ~ 72392841 (-)
G293984 NA other downstream 360470 71903314 ~ 71903908 (-)
G292919 NA other downstream 1224226 71027619 ~ 71040152 (-)
G292753 NA other downstream 1543787 70720036 ~ 70720591 (-)
G291977 NA other downstream 2156428 70107540 ~ 70107950 (-)
G294451 NA other upstream 304599 72571249 ~ 72575432 (-)
G294697 NA other upstream 508757 72775407 ~ 72776607 (-)
G296011 NA other upstream 1305642 73572292 ~ 73572911 (-)
G296043 NA other upstream 1365388 73632038 ~ 73633036 (-)

Expression


Co-expression Network