XLOC_021830 (plpbp)


Basic Information

Item Value
gene id XLOC_021830
gene name plpbp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33963619 ~ 33976116 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043281
CGTCAGGCGGCTGGTGTATGCGCGCACTCTGGCTATGTGGAGAGTAGTGATGATGTCGGAGGAGGTTGGTAAGAAAGTGCAGGCGGTGGTGGAGCGGGTGAATCAAGCGGTTTCCCGACGCCCGAAGACGTTACCATGTATACCCCCACGACTGGTTGCAGTTAGTAAGACGAAACCACCAGAAATGGTGGTGGAGGCTTACAAACATGGACAGCGAAACTTTGGAGAGAATTACGTAAATGAACTTGTTGAGAAAGCGTCCAATCCCCAGATTTTGTCATCATGTCCTGAAATAAAGTGGCATTTCATTGGTCATCTGCAAAAGGGTAACGTCAACAAACTCCTGGGTGTCCCAAACCTGTATATGGTAGAGACGATTGACTCTGTGAAACTGGCAGAAAAAGTCAACAGCTCATGGCAAAAACTGAGAGCGGCCAACACACACAGGTTAAAGATTATGGTTCAGATCAACACCAGCGGAGAGGACAGTAAACATGGCCTGCCACCTGATGAGACCGTAAACATGGTAAAACATGTTGTATCTCAGTGTCCAGCGCTTGATCTCGCCGGGCTCATGACGATTGGCCGTTACGGTTATGACCTCAACGATGGCCCCAATCCTGATTTCCAGCTGCTGTTAAAATGTCGTGTTGAAGTTTGCGAGAGTCTGAAGATCCCATTGGAGCAGGTTGAGCTCAGCATGGGCATGTCTACTGACTTTGAACATGCGATCGAGGTTGGATCCACCAACATACGTGTTGGCAGCACCATTTTCGGCACTCGCGAATATCCCAACACTCCAAGCCCCAGCCCGGAGAAAAAGCCAAAGGTTGTATGTGAGGAAGCGGCTAGAAAAATGGACCGGCTTACCGTCACAGAGCAATGAACGATGGGGAAAAGCAGGTTAATTGAACAAATAATGGGACTTCTTGGGTTTCTTCCCAATGACTGGGCTCACCATTCACCAGTCAAGGGCCTTTAATAAGTCTTAAATAACGCTACCGACCTTCTGTGGCAAGAAAGAAGCGCAATTTATTAACTGGAATACTAAATTTGCTTCCTGAAGGTGTTTTTATTGTCGAAAGATCTCCAGAAGTGTCCTCCAGCCCTGTGTAAAATACTTGTGGGATTTGCTAAGGTTTTGTTTTCTAACAGATACAGGGTCAGCACATGCTTCGTTTCGTTGTGCCAATCGTAGATGTGAAGTATCATTTCTGTCATTTTCATTTGGATTAGACGACGCTTGTGGCCCATTTGAACCTTTAAGTGAAACTATAGGGTGTACTGTTTTGTTCCTAGAAGTGTGTAGGTATATTTTATAG
>TCONS_00043282
CTGGCTATGTGGAGAGTAGTGATGATGTCGGAGGAGGTTGGTAAGAAAGTGCAGGCGGTGGTGGAGCGGGTGAATCAAGCGGTTTCCCGACGCCCGAAGACGTTACCATGTATACCCCCACGACTGGTTGCAGTTAGTAAGACGAAACCACCAGAAATGGTGGTGGAGGCTTACAAACATGGACAGCGAAACTTTGGAGAGAATTACGTAAATGAACTTGTTGAGAAAGCGTCCAATCCCCAGATTTTGTCATCATGTCCTGAAATAAAGTGGCATTTCATTGGTCATCTGCAAAAGGGTAACGTCAACAAACTCCTGGGTGTCCCAAACCTGTATATGGTAGAGACGATTGACTCTGTGAAACTGGCAGAAAAAGTCAACAGCTCATGGCAAAAACTGAGAGCGGCCAACACACACAGGTTAAAGATTATGGTTCAGATCAACACCAGCGGAGAGGACAGTAAACATGGCCTGCCACCTGATGAGACCGTAAACATGGTAAAACATGTTGTATCTCAGTGTCCAGCGCTTGATCTCGCCGGGCTCATGACGATTGGCCGTTACGGTTATGACCTCAACGATGGCCCCAATCCTGATTTCCAGCTGCTGTTAAAATGTCGTGTTGAAGTTTGCGAGAGTCTGAAGATCCCATTGGAGCAGGTTGAGCTCAGCATGGGCATGTCTACTGACTTTGAACATGCGATCGAGGTTGGATCCACCAACATACGTGTTGGCAGCACCATTTTCGGCACTCGCGAATATCCCAACACTCCAAGCCCCAGCCCGGAGAAAAAGCCAAAGGTTGTATGTGAGGAAGCGGCTAGAAAAATGGACCGGCTTACCGTCACAGAGCAATGAACGATGGGGAAAAGCAGGTTAATTGAACAAATAATGGGACTTCTTGGGTTTCTTCCCAATGACTGGGCTCACCATTCACCAGTCAAGGGCCTTTAATAAGTCTTAAATAACGCTACCGACCTTCTGTGGCAAGAAAGAAGCGCAATTTATTAACTGGAATACTAAATTTGCTTCCTGAAGGTGTTTTTATTGTCGAAAGATCTCCAGAAGTGTCCTCCAGCCCTGTGTAAAATACTTGTGGGATTTGCTAAGGTTTTGTTTTCTAACAGATACAGGGTCAGCACATGCTTCGTTTCGTTGTGCCAATCGTAGATGTGAAGTATCATTTCTGTCATTTTCATTTGGATTAGACGACGCTTGTGGCCCATTTGAACCTTTAAGTGAAACTATAGGgtgaactatccctttaagtatccACTTGTCGTCAATGAGACGTTTCAGGACtgatgtgtgtgcgtttgtgtgtgtgatgatgttgTAACGCGTAGTATTTCATGTCCTTTAAATGACTAGCATCAAATTTGGTGCCGACTTTGAGAACAGAACATAGAAATGCAATGAACATTAGCAGAGAGATGAACAGGTGTTTGGTGTTTTGGAGGAGTTGAGGGTCCGAGGCCTTTTACTATGCAAGAGAGAGATCTTAGATGCTTGTTTAGAGGCGTTCATATTTTAAGTTTGGATTAATGCAGTGTTGTGTCCAACTAATGGGTTTGCTATTTGTGATCCAAaatcaaaattaacattttttttttgttgttttcaattTGTGTGTTAAATAACATCTTGTATTGTTTTGTCAATAGATAGATGCATATTATATTTCATTGATTTAGGTGAGTcgagc

Function

symbol description
plpbp Predicted to enable pyridoxal phosphate binding activity. Human ortholog(s) of this gene implicated in early-onset vitamin B6-dependent epilepsy. Orthologous to human PLPBP (pyridoxal phosphate binding protein).

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1378 Predicted to enable pyridoxal phosphate binding activity. Human ortholog(s) of this gene implicated in early-onset vitamin B6-dependent epilepsy. Orthologous to human PLPBP (pyridoxal phosphate binding protein).

Ensembl:

ensembl_id ENSDARG00000060288

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043281 False 1322 mRNA 0.46 8 33963619 33975156
TCONS_00043282 True 1705 mRNA 0.44 9 33963647 33976116

Neighbor

gene id symbol gene type direction distance location
XLOC_021829 snrpg coding upstream 1630 33957350 ~ 33961989 (+)
XLOC_021828 wu:fc63a07 coding upstream 10513 33934228 ~ 33953106 (+)
XLOC_021827 cs coding upstream 35303 33907899 ~ 33928316 (+)
XLOC_021825 CR381531.2 coding upstream 62282 33777519 ~ 33901337 (+)
XLOC_021826 CR381531.1 coding upstream 133429 33828665 ~ 33830190 (+)
XLOC_021831 NA coding downstream 2595 33978711 ~ 33983432 (+)
XLOC_021832 fam50a coding downstream 11266 33987382 ~ 34023632 (+)
XLOC_021833 AL954678.1 coding downstream 26641 34002757 ~ 34002873 (+)
XLOC_021834 sars1 coding downstream 54434 34030550 ~ 34043651 (+)
XLOC_021835 chchd6a coding downstream 71297 34047413 ~ 34185019 (+)
XLOC_021824 CR354542.1 non-coding upstream 202954 33759747 ~ 33760665 (+)
XLOC_021821 CT027694.1 non-coding upstream 425450 33538051 ~ 33538169 (+)
XLOC_021820 NA non-coding upstream 504354 33455563 ~ 33459265 (+)
XLOC_021817 dre-mir-205 non-coding upstream 673258 33290273 ~ 33290361 (+)
XLOC_021837 NA non-coding downstream 788827 34764943 ~ 34768352 (+)
XLOC_021838 CR352218.1 non-coding downstream 873599 34849715 ~ 34987363 (+)
XLOC_021839 NA non-coding downstream 970331 34946447 ~ 34948499 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020777 NA coding CM030127.1 CM030127.1 32594270 ~ 32598433 (-)