XLOC_021835 (chchd6a)


Basic Information

Item Value
gene id XLOC_021835
gene name chchd6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 34047413 ~ 34185019 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043292
GCTCCCTACAAACCAACGCTTCTCAACGGTAAGATGTGAATCTGTCAAACATATTGCGTGTTTACGAAATTACTTGTATTCGATTCAATTAAAAAGTGACATATCCATCTTCGAACACAGCTCCATTAACGAGGCTGTAGCAAAAAGCAATGGGATCCGGAGAAAGCACGACAAGGAGAGTTTCTTTCGGCCTAGATGAGGATGACAGGGTGAGGATTCTGCGTGGAGTGAAGCTGTCTGAAGACGTCTTACAACGCATGAGGAACACCAACGCTGATCCAAGACCACCTGCCAACAATAAAGAAAACCAAGGCCATCAAACTCGAACACCCAGCACATCAGACGCACAAGCTCCAAAAACACAGGCCAAAACGACGTTTCCCGACTCTAAAGAGGAGCTCAAAAAGAGGTATGAGCAGCAGCAGGCCATTATACAGGAGGAATTGGCTCGCATCGCACGCAAAGAGAGAGAGGCAGCGCGGCAGGACATCAGTCGAGCGGTGCAGAGAGAGCGAGCACAGACGCGGCAGGAGTCTGAGAGAGCCAAACAGCTGGGGAAACAGCTGGACAAGAAGGAGGCAGAGCTGAAGGCGTTGGAGGCTTTTTACCAAGAACAAATCACACAGCTTGAGAAGAAgAATGAAGAACGCTTCAGGATGTCTGCCGAACAGTTCCACGCTGCTGCAACCAGGAGCGAAGCCAATATAAAggcaCGTAATGTGGAGCCAGTGTGTTTAAACCTACAAGCTCAGATCCTGAACTGCTATAGAGAAAACCGTGAGCAGACGCTTCAGTGCTCAGATCTGGCCAAAGAGTACATGCAGTGCATCAATGCAGCTAAGAAGAATCTGCTGGTGAATCATGGATAGAGAGGATCATGGTCACCTGTGGCTCGTGTTGATCTGTGTCTGGTTTCATGGGCCGCTTCATCTTTAGCCTCTCCATCCAATTACCATCTGATCCCGGGACTCCAATGTACTGAACTGCAGCTCACAGGCCTCCATGAGTATTTCATTATCTGCTACAGCACTGACAGTGGCGTTTTTATAAGAGTACACTCAGGAAATACTGATGCTTTTATTTGTCAGGATTCTTATTTATGCATTGTATTTCGCCAAAAAGCAGAAACTTCATAAACAGATAGCTGCCCAAAAGCTGA
>TCONS_00043293
CCCTACAAACCAACGCTTCTCAACGCTCCATTAACGAGGCTGTAGCAAAAAGCAATGGGATCCGGAGAAAGCACGACAAGGAGAGTTTCTTTCGGCCTAGATGAGGATGACAGGGTGAGGATTCTGCGTGGAGTGAAGCTGTCTGAAGACGTCTTACAACGCATGAGGAACACCAACGCTGATCCAAGACCACCTGCCAACAATAAAGAAAACCAAGGCCATCAAACTCGAACACCCAGCACATCAGACGCACAAGCTCCAAAAACACAGGCCAAAACGACGTTTCCCGACTCTAAAGAGGAGCTCAAAAAGAGGTATGAGCAGCAGCAGGCCATTATACAGGAGGAATTGGCTCGCATCGCACGCAAAGAGAGAGAGGCAGCGCGGCAGGACATCAGTCGAGCGGTGCAGAGAGAGCGAGCACAGACGCGGCAGGAGTCTGAGAGAGCCAAACAGCTGGTGAGTCTCTTCTGCAAACACTTCAGCACAACACAGTACTTCAGGACTGAAGTATAACGACACAGGCAAGCACACTCTGACTCCACTGCATCCCGAGGCAGCCGGCTTAAATGCTGTGCATAAT
>TCONS_00044859
CCCTACAAACCAACGCTTCTCAACGCTCCATTAACGAGGCTGTAGCAAAAAGCAATGGGATCCGGAGAAAGCACGACAAGGAGAGTTTCTTTCGGCCTAGATGAGGATGACAGGGTGAGGATTCTGCGTGGAGTGAAGCTGTCTGAAGACGTCTTACAACGCATGAGGAACACCAACGCTGATCCAAGACCACCTGCCAACAATAAAGAAAACCAAGGCCATCAAACTCGAACACCCAGCACATCAGACGCACAAGCTCCAAAAACACAGGCCAAAACGACGTTTCCCGACTCTAAAGAGGAGCTCAAAAAGAGGTATGAGCAGCAGCAGGCCATTATACAGGAGGAATTGGCTCGCATCGCACGCAAAGAGAGAGAGGCAGCGCGGCAGGACATCAGTCGAGCGGTGCAGAGAGAGCGAGCACAGACGCGGCAGGAGTCTGAGAGAGCCAAACAGCTGGGGAAACAGCTGGACAAGAAGGAGGCAGAGCTGAAGGCGTTGGAGGCTTTTTACCAAGAACAAATCACACAGCTTGAGAAGAAgAATCTGCTGGTGAATCATGGATAGAGAGGATCATGGTCACCTGTGGCTCGTGTTGATCTGTGTCTGGTTTCATGGGCCGCTTCATCTTTAGCCTCTCCATCCAATTACCATCTGATCCCGGGACTCCAATGTACTGAACTGCAGCTCACAGGCCTCCATGAGTATTTCATTATCTGCTACAGCACTGACAGTGGCGTTTTTATAAGAGTACACTCAGGAAATACTGATGCTTTTATTTGTCAGGATTCTTATTTATGCATTGTATTTCGCCAAAAAGCAGAAACTTCATAAACAGATAGCTGCCCAAAA
>TCONS_00044858
CCCTACAAACCAACGCTTCTCAACGCTCCATTAACGAGGCTGTAGCAAAAAGCAATGGGATCCGGAGAAAGCACGACAAGGAGAGTTTCTTTCGGCCTAGATGAGGATGACAGGGTGAGGATTCTGCGTGGAGTGAAGCTGTCTGAAGACGTCTTACAACGCATGAGGAACACCAACGCTGATCCAAGACCACCTGCCAACAATAAAGAAAACCAAGGCCATCAAACTCGAACACCCAGCACATCAGACGCACAAGCTCCAAAAACACAGGCCAAAACGACGTTTCCCGACTCTAAAGAGGAGCTCAAAAAGAGGTATGAGCAGCAGCAGGCCATTATACAGGAGGAATTGGCTCGCATCGCACGCAAAGAGAGAGAGGCAGCGCGGCAGGACATCAGTCGAGCGGTGCAGAGAGAGCGAGCACAGACGCGGCAGGAGTCTGAGAGAGCCAAACAGCTGGGGAAACAGCTGGACAAGAAGGAGGCAGAGCTGAAGGCGTTGGAGGCTTTTTACCAAGAACAAATCACACAGCTTGAGAAGAAgAATGAAGAACGCTTCAGGATGTCTGCCGAACAGTTCCACGCTGCTGCAACCAGGAGCGAAGCCAATATAAAAATCTGCTGGTGAATCATGGATAGAGAGGATCATGGTCACCTGTGGCTCGTGTTGATCTGTGTCTGGTTTCATGGGCCGCTTCATCTTTAGCCTCTCCATCCAATTACCATCTGATCCCGGGACTCCAATGTACTGAACTGCAGCTCACAGGCCTCCATGAGTATTTCATTATCTGCTACAGCACTGACAGTGGCGTTTTTATAAGAGTACACTCAGGAAATACTGATGCTTTTATTTGTCAGGATTCTTATTTATGCATTGTATTTCGCCAAAAAGCAGAAACTTCATAAACAGATAGCTGCCCAAAA
>TCONS_00043294
ACGGTAAGATGTGAATCTGTCAAACATATTGCGTGTTTACGAAATTACTTGTATTCGATTCAATTAAAAAGTGACATATCCATCTTCGAACACAGCTCCATTAACGAGGCTGTAGCAAAAAGCAATGGGATCCGGAGAAAGCACGACAAGGAGAGTTTCTTTCGGCCTAGATGAGGATGACAGGGTGAGGATTCTGCGTGGAGTGAAGCTGTCTGAAGACGTCTTACAACGCATGAGGAACACCAACGCTGATCCAAGACCACCTGCCAACAATAAAGAAAACCAAGGCCATCAAACTCGAACACCCAGCACATCAGACGCACAAGCTCCAAAAACACAGGCCAAAACGACGTTTCCCGACTCTAAAGAGGAGCTCAAAAAGAGGTATGAGCAGCAGCAGGCCATTATACAGGAGGAATTGGCTCGCATCGCACGCAAAGAGAGAGAGGCAGCGCGGCAGGACATCAGTCGAGCGGTGCAGAGAGAGCGAGCACAGACGCGGCAGGAGTCTGAGAGAGCCAAACAGCTGCCTGCCTCTGAACTGGATGCCTGGGGGAAACAGCTGGACAAGAAGGAGGCAGAGCTGAAGGCGTTGGAGGCTTTTTACCAAGAACAAATCACACAGCTTGAGAAGAAgAATGAAGAACGCTTCAGGATGTCTGCCGAACAGTTCCACGCTGCTGCAACCAGGAGCGAAGCCAATATAAA
>TCONS_00043295
CTCCATTAACGAGGCTGTAGCAAAAAGCAATGGGATCCGGAGAAAGCACGACAAGGAGAGTTTCTTTCGGCCTAGATGAGGATGACAGGGTGAGGATTCTGCGTGGAGTGAAGCTGTCTGAAGACGTCTTACAACGCATGAGGAACACCAACGCTGATCCAAGACCACCTGCCAACAATAAAGAAAACCAAGGCCATCAAACTCGAACACCCAGCACATCAGACGCACAAGCTCCAAAAACACAGGCCAAAACGACGTTTCCCGACTCTAAAGAGGAGCTCAAAAAGAGGTATGAGCAGCAGCAGGCCATTATACAGGAGGAATTGGCTCGCATCGCACGCAAAGAGAGAGAGGCAGCGCGGCAGGACATCAGTCGAGCGGTGCAGAGAGAGCGAGCACAGACGCGGCAGGAGTCTGAGAGAGCCAAACAGCTGCCTGCCTCTGAACTGGATGCCTGGGGGAAACAGCTGGACAAGAAGGAGGCAGAGCTGAAGGCGTTGGAGGCTTTTTACCAAGAACAAATCACACAGCTTGAGAAGAAgAATGAAGAACGCTTCAGGATGTCTGCCGAACAGTTCCACGCTGCTGCAACCAGGAGCGAAGCCAATATAAAggcaCGTAATGTGGAGCCAGTGTGTTTAAACCTACAAGCTCAGATCCTGAACTGCTATAGAGAAAACCGTGAGCAGACGCTTCAGTGCTCAGATCTGGCCAAAGAGTACATGCAGTGCATCAATGCAGCTAAGAAGAATCTGCTGGTGAATCATGGATAG
>TCONS_00043296
TGGGATCCGGAGAAAGCACGACAAGGAGAGTTTCTTTCGGCCTAGATGAGGATGACAGGGTGAGGATTCTGCGTGGAGTGAAGCTGTCTGAAGACGTCTTACAACGCATGAGGAACACCAACGCTGATCCAAGACCACCTGCCAACAATAAAGAAAACCAAGGCCATCAAACTCGAACACCCAGCACATCAGACGCACAAGCTCCAAAAACACAGGCCAAAACGACGTTTCCCGACTCTAAAGAGGAGCTCAAAAAGAGGTATGAGCAGCAGCAGGCCATTATACAGGAGGAATTGGCTCGCATCGCACGCAAAGAGAGAGAGGCAGCGCGGCAGGACATCAGTCGAGCGGTGCAGAGAGAGCGAGCACAGACGCGGCAGGAGTCTGAGAGAGCCAAACAGCTGGGGAAACAGCTGGACAAGAAGGAGGCAGAGCTGAAGGCGTTGGAGGCTTTTTACCAAGAACAAATCACACAGCTTGAGAAGAAgAATCTGCTGGTGAATCATGGATAGAGAGGATCATGGTCACCTGTGGCTCGTGTTGATCTGTGTCTGGTTTCATGGGCCGCTTCATCTTTAGCCTCTCCATCCAATTACCATCTGATCCCGGGACTCCAATGTACTGAACTGCAGCTCACAGGCCTCCATGAGTATTTCATTATCTGCTACAGCACTGACAGTGGCGTTTTTATAAGAGTACACTCAGGAAATACTGATGCTTTTATTTGTCAGGATTCTTATTTATGCATTGTATTTCGCCAAAAAGCAGAAACTTCATAAACAGATAGCTGCC
>TCONS_00043297
CAGCGCGGCAGGACATCAGTCGAGCGGTGCAGAGAGAGCGAGCACAGACGCGGCAGGAGTCTGAGAGAGCCAAACAGCTGGGGAAACAGCTGGACAAGAAGGAGGCAGAGCTGAAGGCGTTGGAGGCTTTTTACCAAGAACAAATCACACAGCTTGAGAAGAAgAATGAAGAACGCTTCAGGATGTCTGCCGAACAGTTCCACGCTGCTGCAACCAGGAGCGAAGCCAATATAAAAATCTGCTGGTGAATCATGGATAGAGAGGATCATGGTCACCTGTGGCTCGTGTTGATCTGTGTCTGGTTTCATGGGCCGCTTCATCTTTAGCCTCTCCATCCAATTACCATCTGATCCCGGGACTCCAATGTACTGAACTGCAGCTCACAGGCCTCCATGAGTATTTCATTATCTGCTACAGCACTGACAGTGGCGTTTTTATAAGAGTACACTCAGGAAATACTGATGCTTTTATTTGTCAGGATTCTTATTTATGCATTGTATTTCGCCAAAAAGCAGAAACTTCATAAACAGATAGCTGCCCAAAA

Function

symbol description
chchd6a Predicted to be involved in cellular response to DNA damage stimulus and cristae formation. Predicted to be located in mitochondrial inner membrane. Predicted to be part of MICOS complex. Orthologous to human CHCHD6 (coiled-coil-helix-coiled-coil-helix domain containing 6).

GO:

id name namespace
GO:0042407 cristae formation biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0007007 inner mitochondrial membrane organization biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0061617 MICOS complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040930-2 Predicted to be involved in cellular response to DNA damage stimulus and cristae formation. Predicted to be located in mitochondrial inner membrane. Predicted to be part of MICOS complex. Orthologous to human CHCHD6 (coiled-coil-helix-coiled-coil-helix domain containing 6).

Ensembl:

ensembl_id ENSDARG00000003206

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043292 False 1159 mRNA 0.47 8 34047413 34185019
TCONS_00043293 False 583 processed_transcript 0.52 5 34047416 34053709
TCONS_00044859 False 852 lncRNA 0.49 7 34047416 34185014
TCONS_00044858 False 923 lncRNA 0.49 8 34047416 34185014
TCONS_00043294 False 708 mRNA 0.50 7 34047438 34110666
TCONS_00043295 False 773 mRNA 0.51 9 34047533 34184729
TCONS_00043296 False 792 processed_transcript 0.49 6 34047563 34185009
TCONS_00043297 True 544 processed_transcript 0.48 4 34053506 34185014

Neighbor

gene id symbol gene type direction distance location
XLOC_021834 sars1 coding upstream 3762 34030550 ~ 34043651 (+)
XLOC_021832 fam50a coding upstream 23781 33987382 ~ 34023632 (+)
XLOC_021833 AL954678.1 coding upstream 44540 34002757 ~ 34002873 (+)
XLOC_021831 NA coding upstream 63981 33978711 ~ 33983432 (+)
XLOC_021830 plpbp coding upstream 71297 33963619 ~ 33976116 (+)
XLOC_021836 plxna1a coding downstream 136218 34321237 ~ 34753811 (+)
XLOC_021837 NA coding downstream 579924 34764943 ~ 34768352 (+)
XLOC_021838 CR352218.1 coding downstream 664696 34849715 ~ 34987363 (+)
XLOC_021839 NA coding downstream 761428 34946447 ~ 34948499 (+)
XLOC_021840 CHST13 coding downstream 805674 34990693 ~ 35025117 (+)
XLOC_021826 CR381531.1 non-coding upstream 217223 33828665 ~ 33830190 (+)
XLOC_021824 CR354542.1 non-coding upstream 286748 33759747 ~ 33760665 (+)
XLOC_021821 CT027694.1 non-coding upstream 509244 33538051 ~ 33538169 (+)
XLOC_021841 CU459147.1 non-coding downstream 1010721 35195740 ~ 35208386 (+)
XLOC_021843 NA non-coding downstream 1299875 35484894 ~ 35487575 (+)

Expression


Co-expression Network