XLOC_021840 (CHST13)


Basic Information

Item Value
gene id XLOC_021840
gene name CHST13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 34990693 ~ 35025117 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043300
CTAAACAGAAGCGGTTTGTTCTCCGGCGGACAAGCGAGGTGCTTCGGGTGAAGCGTGTGTCGGAATTAGTTTTCACGAAGTTCGTTTGGGACTCGATGTATGTTGTACTTCTTCTGAAATGAGATGAACAGACGATTTTAGGAGTGTTCTTCGGCGACAACAGCCCTTCTCGGACCTCTGTCGCCGGGCGAGAGTCGGACATCGACCGACCACGGGGGGCTATCAGAATGATAAAGCCCAAAGTGGGTCGGATGTTTCTGGCGACATGCGTCGGGTCGTTTTTCATTCTCATACTGTACTTCCAGAACATCTCAAAATCAGcTTCTGAACAGATTTCGGGTCGGGACAGTTTCCCAGTTAAATCAGGAAGAAGTCCTTTACAGACACTACAGGAAAATGACCAGCTGGAGCAATCTGCAGTGCAGGCCACTATGCAGGGTCGAAGGGAACTCCTGGAGGAAAcctgtcacacacatacacgcaaaaGACGGGTACTCGGCCCCGAGGATCTTCGCCACCTCATAGTGGACGATAAGCACAAGTTACTGTACTGCTATGTTCCCAAAGTGGCGTGCACCAATTGGAAGCGTGTGATGATGGTGCTAACAGGTGACGGGCGCTATCGTGAACCGCTGGCTATTCCCGCCAATGAGGCCCACATAGCAGGCAATCTGCGCTCGCTTTCGGAGTACTCAACAGCCGAGATCAACAAGCGTCTACGCACATATCTGAAGTTTGTTTTCGTGCGTGAACCCTTCGAGAGATTAGTCTCTGCCTATCGCAATAAGTTCACCCGTAGCTACAACACAGCCTTTCATAAACGATACGGGACCAAAATCATCCAGAGGCATCGTGCGGACCCCCAGGCTGAAGCCCTGGAAAAAGGCAACGACGTCTCTTTTGAGGAGTTTGTGTATTATTTAGTAGACCCTCAGACTCAGAGGGAGGAACCATTTAATGAGCATTGGGAAAGAGTTCACTCACTTTGCCACCCTTGCCTGATCCATTACGATGTGGTGGGCAAATATGAGACTCTTGCGCAAGACTCGCGCTACATCCTAAAGCTAGCAGGTGCAGAAGGAGAGGTCAAATTCCCAGCCACCTCGAAAAGCACCAGGACCACGGGCGACATGGCTGCCAAGTTCTTTGACAACATCAGTCCGTTTTATCAGAAGAAACTTTACAACCTTTACCGAATGGATTTCTTGCTTTTTAACTATTCTATGCCTGCGTACTTGAAGTTGAGATGA

Function

symbol description
chst13 Is expressed in epiphysis; head; midbrain hindbrain boundary; somite; and tail bud.

GO: NA

KEGG:

id description
ko00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
ko01003 Glycosyltransferases

Ensembl:

ensembl_id ENSDARG00000004018

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043300 True 1250 mRNA 0.50 3 34990693 35025117

Neighbor

gene id symbol gene type direction distance location
XLOC_021838 CR352218.1 coding upstream 3330 34849715 ~ 34987363 (+)
XLOC_021839 NA coding upstream 42194 34946447 ~ 34948499 (+)
XLOC_021837 NA coding upstream 222341 34764943 ~ 34768352 (+)
XLOC_021836 plxna1a coding upstream 236882 34321237 ~ 34753811 (+)
XLOC_021835 chchd6a coding upstream 805674 34047413 ~ 34185019 (+)
XLOC_021841 CU459147.1 coding downstream 170623 35195740 ~ 35208386 (+)
XLOC_021842 si:ch211-225h24.2 coding downstream 377580 35402697 ~ 35498518 (+)
XLOC_021843 NA coding downstream 459777 35484894 ~ 35487575 (+)
XLOC_021844 acp1 coding downstream 479707 35504824 ~ 35537727 (+)
XLOC_021845 NA coding downstream 532073 35557190 ~ 35560512 (+)
XLOC_021833 AL954678.1 non-coding upstream 987820 34002757 ~ 34002873 (+)
XLOC_021831 NA non-coding upstream 1007261 33978711 ~ 33983432 (+)
XLOC_021848 NA non-coding downstream 669155 35694272 ~ 35702721 (+)
XLOC_021851 NA non-coding downstream 698321 35723438 ~ 35727522 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_02863703_02865768 NA coding CI01000001 null 2862762 ~ 2865768 (-)