XLOC_021846 (ccnt1)


Basic Information

Item Value
gene id XLOC_021846
gene name ccnt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35650771 ~ 35664505 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043309
TTTTAAAACATTGTCCTTCTCAGTAATGGCGGCTTCGTTCCCTTCGCCTtcgcaaaataacaataaatggtACTTCACGCGCGAACAAATCGAAAACAGTCCATCTCGCCGAGCGGGACTTGATCCCGACAAAGAGCTCTCGTACCGACAGCAAGCTGCTAACCTGCTGCAGGACATGGGACAGCGGCTCAACGTCTCACAACTCACAATTAACACTGCCATTGTGTATATGCATCGCTTTTACATGGTCCAGTCCTTTACTCGCTTCCACCGGAATGTGATTGCTCCTGCAGCTCTGTTTTTAGCAGCGAAGGTGGAGGAACAGCCCCGTAAACTGGAGCATGTGATTAAGGTGACCCATGCATGTCTCAATCCTCAGGACCCATCACCGGACACCAGGAGTGATACATACCTGCAACAAGCCCAAGACCTGGTCATTCTTGAGAGCATAATACTCCAGACCCTGGGTTTTGAGATCACCATTGATCATCCTCACACACATGTTGTCAAGTGTACTCAGCTTGTGCGAGCGAGTAAGGATTTGGCTCAGACTTCATATTTCATGGCAACAAACAGTCTTCACTTGACTACGTTCTGTCTGCAGTACAGTCCACCAATTGTAGCTTGTGTTTGTATTCATCTGGCCTGTAAATGGTCCAACTGGGAGATTCCCGTTTCCACAGATGGCAAACACTGGTGGCAGTATGTTGACCCCACTGTGACTCTTGAGCTATTGGATGAGCTCACTCATGAGTTCCTGCAGATCTTGGAAAAGACACCCAGCCGCTTAAAACGCACCAGAAACTGGAAAGCTGCAGGTCAAACTGCTAAGAAATCGAAAGTGCAGGATGGCGATCAGTCTGAAGCCATCATGAACATGATCTCAATGTCGTCGTCCGACAGCACATTGGCAGGACTGACGAGCCTCTCCGCTCCGCCCACCGGTTCCTCCATGGACTCTTGTGCAGACGAGCACAGCGCCGCAGCCTCCGCTCAACACTGGCAGCCTCCCAGCAAAGAGCAGCCCACTGCCAACGAGCTCCACGCACCCGCCAAAGTCTCTCTGAGCGAGTATCGGGCCAAACATGCGGATGAGTTGGCGGCACAGAAGAGGGAGCTGAAGAACATGGAGGCAAGTGTGAAGCAGGGATACGCCACTGCCGCCCAGGCCCTAATGAACCAGCAGAGGAAAGATaaacaccatcaccaccagcagACCAGCTCCTCAGACACCAACAACCCATCCCCAATCGTCTTGAAGATCCCGCTGGATGAGCGATCGGAGAGAAGTTCCATAAAAATGCGCTTACCTGTGCCAGGTCAATCCGGCGGGGGTCACAGCCACAGCAGTGGCAGCAGCAGCCGGGGATCAGACCAGGACATCAAAGTGCGCATTCGGGTTCCAGACAGGCGAGGCGGATCTGGAGAAGACGGGAAAAGTCGCGAAAAACACAGAGAGCGATCcaaccaccaccaccatcatcaccaccaccaccaccactctTCCTCCTCCAGCGCCGGTTCCCTCTCAGCATCGTCTTCCTCATCCTCAGCACAAAAACACTCAGCCGGCTCTTCAGGAAGTAGCAAAAAGCTCTCAGGTGATTCAGTGCGGACGAGCTCTTCATCAATGTCGCGAAAACGAACCCACATGCCAGACCCTTCCTCCTCCAGCACCCACTCGTCCTCAAAAGTCAGCAAATCGTCCAGAAACTCATTTCAGTTGCCCACGCTCCCTGGATTGCCGTCTCATGTGATGCCCGACATCCTTCCCTCGCTGCACCATCAGGGAAACTATTCGCACTCCAAGACGGACAAAGCGGATACAAACGGTCACAACGCGGCCGGACAGTCGAACGAGTACCAGGACACGTTTGACATGTTGAACTCGCTGCTCAGTGCGCAGGGCGTCCAGCCGGCACAACCTCAGATATTTGACTACCGCTCTCAGTACGGAGAGTTTCGCTATAGCAGTGGCGCTCGCGGAGGAGCACAGCCGCCACCTTTACCCTCAGAACCACCTCCACCTCTGCCTCCATTGCCCAAATAAAGCGCCCTCGCATCATCCGTCCACACACGCTGATCAAATCAGTGCTTTCGGGAGTCCTGTGTGCGTCTAACTTTAGTGTGATGTCGCGTTTGACAGCAGAGTAATGTAAGGCAAAAAAAGCCCTAATGTTGTCTtgcgtctttgtgtgtgtgtgcgtgcgcaagCGAGTACGTTCACAACACCCCATCTGTGGCAATAATGTTAAAGTagaacaaaatattgcaaaaaaaaggcaaaaatgttatttattgaaacgagaaaaaaaataattgtacatACTACTATTTTTTGATGTCGTTCACTTTTATATCCGCGCTAACAGAAAAGCATAATGGAATTAAGGGTAATGTATTACTGAATGAGAGGGACTCGCggtcctctttaaaaaaaaaaaagtgtaacctTGAATGCAAAAATGGAAAATGTTCGCTAACAATATATATGTGTCTTTTTTATGGAGTATGGTATTTATTATTAGCCTTTTAAATCCATAGTTATTAGCAGTCGTTGCTTGAATGCGTCTCCAGACGAGATCTggatttatttttatactgttgtAAGTAAACCTACTTCCCAGTCTGTATTTACTTGATGTGTGTCATGAGAAAtggacacgcacacaaacacaaatcacCAATATTCGCATCATAATGTGTTCCTAAATTCACGAAtagtttcatttttgttttgtttggtaaaTATTTTTGCTTTCAACTTCTATTAATGGTGAAAATTGACgactatttaaaagaaaaaaacctaaaaaaaaaaaaaaa
>TCONS_00043310
GTTCCCTTCGCCTtcgcaaaataacaataaatggtACTTCACGCGCGAACAAATCGAAAACAGTCCATCTCGCCGAGCGGGACTTGATCCCGACAAAGAGCTCTCGTACCGACAGCAAGCTGCTAACCTGCTGCAGGACATGGGACAGCGGCTCAACGTCTCACAACTCACAATTAACACTGCCATTGTGTATATGCATCGCTTTTACATGGTCCAGTCCTTTACTCGCTTCCACCGGAATGTGATTGCTCCTGCAGCTCTGTTTTTAGCAGCGAAGGTGGAGGAACAGCCCCGTAAACTGGAGCATGTGATTAAGGTGACCCATGCATGTCTCAATCCTCAGGACCCATCACCGGACACCAGGAGTGATGTTTTGAGATCACCATTGATCATCCTCACACACATGTTGTCAAGTGTACTCAGCTTGTGCGAGGTGAGAACCAGCTGCTCACTCTAAACTGTGCTTCGTATTGCTCAGTAAAGGGTACGTCTAGCACACCAAGCTCACAGATTTCACGTCTGATCATGAGCTTTCCTTTTATTGTTCCAGCGAGTAAGGATTTGGCTCAGACTTCATATTTCATGGCAACAAACAGTCTTCACTTGACTACGTTCTGTCTGCAGTACAGTCCACCAATTGTAGCTTGTGTTTGTATTCATCTGGCCTGTAAATGGTCCAACTGGGAGATTCCCGTTTCCACAGATGGCAAACACTGGTGGCAGTATGTTGACCCCACTGTGACTCTTGAGCTATTGGATGAGCTCACTCATGAGTTCCTGCAGATCTTGGAAAAGACACCCAGCCGCTTAAAACGCACCAGAAACTGGAAAGCTGCAGGTCAAACTGCTAAGAAATCGAAAGTGCAGGATGGCGATCAGTCTGAAGCCATCATGAACATGATCTCAATGTCGTCGTCCGACAGCACATTGGCAGGACTGACGAGCCTCTCCGCTCCGCCCACCGGTTCCTCCATGGACTCTTGTGCAGACGAGCACAGCGCCGCAGCCTCCGCTCAACACTGGCAGCCTCCCAGCAAAGAGCAGCCCACTGCCAACGAGCTCCACGCACCCGCCAAAGTCTCTCTGAGCGAGTATCGGGCCAAACATGCGGATGAGTTGGCGGCACAGAAGAGGGA

Function

symbol description
ccnt1 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of DNA-templated transcription, elongation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Orthologous to human CCNT1 (cyclin T1).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0032786 positive regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0008024 cyclin/CDK positive transcription elongation factor complex cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6397 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of DNA-templated transcription, elongation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Orthologous to human CCNT1 (cyclin T1).

Ensembl:

ensembl_id ENSDARG00000017525

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043309 False 2826 mRNA 0.48 10 35650771 35664505
TCONS_00043310 True 1136 lncRNA 0.51 7 35650807 35661553

Neighbor

gene id symbol gene type direction distance location
XLOC_021845 NA coding upstream 90259 35557190 ~ 35560512 (+)
XLOC_021844 acp1 coding upstream 113044 35504824 ~ 35537727 (+)
XLOC_021842 si:ch211-225h24.2 coding upstream 152253 35402697 ~ 35498518 (+)
XLOC_021843 NA coding upstream 163196 35484894 ~ 35487575 (+)
XLOC_021841 CU459147.1 coding upstream 442385 35195740 ~ 35208386 (+)
XLOC_021847 pmelb coding downstream 8037 35672542 ~ 35690336 (+)
XLOC_021848 NA coding downstream 29767 35694272 ~ 35702721 (+)
XLOC_021849 tuba1a coding downstream 44225 35708730 ~ 35711398 (+)
XLOC_021850 tuba1b coding downstream 49052 35713557 ~ 35716519 (+)
XLOC_021851 NA coding downstream 58933 35723438 ~ 35727522 (+)
XLOC_021838 CR352218.1 non-coding upstream 663408 34849715 ~ 34987363 (+)
XLOC_021839 NA non-coding upstream 702272 34946447 ~ 34948499 (+)
XLOC_021852 NA non-coding downstream 64750 35729255 ~ 35730062 (+)
XLOC_021854 BX465853.1 non-coding downstream 126303 35790808 ~ 35798279 (+)
XLOC_021861 mir196a-1 non-coding downstream 423586 36088091 ~ 36088196 (+)

Expression


Co-expression Network