XLOC_021847 (pmelb)


Basic Information

Item Value
gene id XLOC_021847
gene name pmelb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35672542 ~ 35690336 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043311
CTGAAAGTCTTTAAAGTGCCAACAAAGTGACACAATGAAGCTATTCTCTACAATATTCATATTATCCAGTTTGTCCGGGGGATTAACAAGACAAGCTGACCGAAGCAACTCCAATTCCCGATTCAATCAGTATCAGACACTGAATACAAAGCGGTTCCCAGTTTGGAATGATGGAGACCCACGCTACAAAACCAGCTGGATGGGTGGCCAGCTGAAGTTTGATGTGGGAAATGATGCTCCTACCTTGACCGGTGCAAAAATCAGCTTCACCATTGACATCGTGTTCCCTCATAACCAGAAGGTCCTGCCTGATGGACAAGTTGTTTGGGCAAAAAACTGCACCATCAATGGCACACAGTTTCACGAAGGCGAGCCCGTGTATCCTGAGGAAAACTCATGGAACGCTGTGTCTCCAAATGCTCATCTCTTTTCCAGACAGGGAGACAAGCCACCTCCATATGTGTTTGTATGGAAAACCTGGGGCAAATACTGGCAGGTTTGCGACGGTCCTTCCTCTTCGCTGACCATCGACACTGATGATGTTCCTCTGGGCTCTTATATAATGGATGTTGTCATCTATCACTACAGGCAAAAAGACAGATTCATCCCCATTGGATTTGCATCCACACAGTTCTCGATCATTGACCAGATTCCCTTTGCGGTTTCTCTGACTCAGGTAAACGACAAAGACCAAGGTGATCACAAATTCGTCCAGAACAGAGCAGTGGCCTTCAGCATCACCCTTCACGACCCCAGTGAGTACTTGAGCAAATCTGACGTGACTTTCAACTGGAACTTCGGGGATGGCAGTGGCACTGTAATATCCAGGGAATCCACCGTCACACACACTTACATTGCATCTGGGGTCTTCAAGCCGCAAGTCGTCGTACAGGCAGCTATTCCAGATCCGTCTTGTTCAGGTCCACCGAATCCTCCAGTTGAAGGATCCACTGCCAACACCTTCACCTCTGAGAGCCCCAAACACCCCAGCGAACACCTCGCTACAGATCATCCTACCAGACATTTTTCAGCACCCTTTGTGAAATCCACACCTGTATCTGCAATGAAAACTGTTCCACCTGCACCTACAAATGGAGATCCATCAAAATCCAGCCTTGAGAGGCAGGTTGTTGATCTTGTACCTGAATTTAAGATGTCTGAAACACTGAATACTGTGACAAACACACCACTGAAGGCAACTGCCACAGACATGGTGATGGTGGAGGATGAGTCTATTGAAAACCAAGCCCATGTGTCGATAATAAAGCGTCAGGCCCCAAACATAAACGGCTGTGTGATTTACCGATATGGATCCTTCTCAACTGATATCGAGATTATCGaGGGCATTGAGAGTGTGCAGATCGTCCAGGTGGCTGTAGCTGATGGCTTTCTGCTAACAGAGATGGAGCAGAATGCTGTGGATTTCACCGTTTCTTGCCAAGGAAGCATCCCCACTGAAGTGTGCACTATAGTGTCGGATGCTGACTGTCATGCACCAGTTATGACCATCTGCAATGCCGTGAGCCCATCTTCAGATTGCCAACTCATCCTTCGTCATTTCTTCAATGACTCTGGAACCTTCTGCATTAATGTGTCCATGGCGAATGACGTCAGTATGGCTGTCACAAATGCCAGGGTTAACATAAACATAGCAGGTTCCAGGTTGACATCTGCAGGTGCCGCGGCCCTGTTGTTGGGGATCTTGACTGTCGTATCAGCAATGGCTGCTGTAGCTTTTGCGTATAAGCGTCTTAAAGGGTACCAAAGGCTGACTGAGGATCCAGTAGCATGCCAATCCAATGATTCCGGCGTGTGCTCAATGCCAGCGCTTTTCTGGAGCCTGATGAACCACCAGACGGTGGATCAGAAAAAAGGAGTAGTGTGAATTTTACTTTCGATGATGAAAAAATGTAGGTAGCATTGGCACTATTTTGAATAGCATTAAGAAATTTGAACCTTTTGTACCACTTTTCAATCTTTAATGTTTGAATTggattttgtattatttttgtacaCACATTTGACcccaaattgtttttttttctaccaaaAACTGTTAGTAAGTACAGCGTTCATACTTTAAACTTGAATTTAGAAAGGAAACTTTGGGCCAACAAAGCTTATTTGGTAAAGGACTTCTGGAACCCCATGCATTCATTTTTAACACTACtgaataaaatatcacaaaagcTGCTA
>TCONS_00043312
GAGTCTATTGAAAACCAAGCCCATGTGTCGATAATAAAGCGTCAGGCCCCAAACATAAACGGCTGTGTGATTTACCGATATGGATCCTTCTCAACTGATATCGAGATTATCGaGGGCATTGAGAGTGTGCAGATCGTCCAGGTGGCTGTAGCTGATGGCTTTCTGCTAACAGAGATGGAGCAGAATGCTGTGGATTTCACCGTTTCTTGCCAAGGAAGCATCCCCACTGAAGTGTGCACTATAGTGTCGGATGCTGACTGTCATGCACCAGTTATGACCATCTGCAATGCCGTGAGCCCATCTTCAGATTGCCAACTCATCCTTCGTCATTTCTTCAATGACTCTGGAACCTTCTGCATTAATGTGTCCATGGCGAATGACGTCAGTATGGCTGTCACAAATGCCAGGGTTAACATAAACATAGGTTCCAGGTTGACATCTGCAGGTGCCGCGGCCCTGTTGTTGGGGATCTTGACTGTCGTATCAGCAATGGCTGCTGTAGCTTTTGCGTATAAGCGTCTTAAAGGGTACCAAAGGCTGACTGAGGATCCAGTAGCATGCCAATCCAATGATTCCGGCGTGTGCTCAATGCCAGCGCTTTTCTGGAGCCTGATGAACCACCAGACGGTGGATCAGAAAAAAGGAGTAGTGTGAATTTTACTTTCGATGATGAAAAAATGTAGGTAGCATTGGCACTATTTTGAATAGCATTAAGAAATTTGAACCTTTTGTACCACTTTTCAATCTTTAATGTTTGAATTggattttgtattatttttgtacaCACATTTGACcccaaattgtttttttt

Function

symbol description
pmelb Acts upstream of or within melanosome organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in melanosome. Predicted to be integral component of plasma membrane. Is expressed in optic vesicle; presumptive retinal pigmented epithelium; retina; and retinal pigmented epithelium. Orthologous to human PMEL (premelanosome protein).

GO:

id name namespace
GO:0032438 melanosome organization biological_process
GO:0042470 melanosome cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050912-2 Acts upstream of or within melanosome organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in melanosome. Predicted to be integral component of plasma membrane. Is expressed in optic vesicle; presumptive retinal pigmented epithelium; retina; and retinal pigmented epithelium. Orthologous to human PMEL (premelanosome protein).

Ensembl:

ensembl_id ENSDARG00000033760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043311 False 2196 mRNA 0.45 12 35672542 35690336
TCONS_00043312 True 811 mRNA 0.44 5 35684756 35690182

Neighbor

gene id symbol gene type direction distance location
XLOC_021846 ccnt1 coding upstream 8037 35650771 ~ 35664505 (+)
XLOC_021845 NA coding upstream 112030 35557190 ~ 35560512 (+)
XLOC_021844 acp1 coding upstream 134815 35504824 ~ 35537727 (+)
XLOC_021842 si:ch211-225h24.2 coding upstream 174024 35402697 ~ 35498518 (+)
XLOC_021843 NA coding upstream 184967 35484894 ~ 35487575 (+)
XLOC_021848 NA coding downstream 3936 35694272 ~ 35702721 (+)
XLOC_021849 tuba1a coding downstream 18394 35708730 ~ 35711398 (+)
XLOC_021850 tuba1b coding downstream 23221 35713557 ~ 35716519 (+)
XLOC_021851 NA coding downstream 33102 35723438 ~ 35727522 (+)
XLOC_021852 NA coding downstream 38919 35729255 ~ 35730062 (+)
XLOC_021841 CU459147.1 non-coding upstream 464156 35195740 ~ 35208386 (+)
XLOC_021838 CR352218.1 non-coding upstream 685179 34849715 ~ 34987363 (+)
XLOC_021854 BX465853.1 non-coding downstream 100472 35790808 ~ 35798279 (+)
XLOC_021861 mir196a-1 non-coding downstream 397755 36088091 ~ 36088196 (+)

Expression


Co-expression Network