XLOC_021849 (tuba1a)


Basic Information

Item Value
gene id XLOC_021849
gene name tuba1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35708730 ~ 35711398 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043313
GTTGTCGAGCTGTAAGATCTCTCCGCCAAGACTTCTTTCTTCCCCGGCCAAGCAACACTACTAGAAACAATGCGTGAGTGCATCTCTATCCACGTTGGTCAGGCTGGAGTTCAGATCGGCAATGCCTGCTGGGAACTGTATTGTCTTGAGCATGGCATCCAGCCGGATGGGCAGATGCCCAGCGACAAAACCATCGGAGGAGGTGATGACTCCTTCAACACCTTCTTCAGTGAGACCGGAGCTGGAAAACACGTCCCTAGGGCTGTCTTTGTAGACCTGGAGCCCACTGTCATTGATGAGGTGCGCACTGGGACATACCGTCAGCTGTTCCACCCTGAGCAGCTCATCACAGGAAAGGAAGATGCTGCTAATAACTATGCTCGTGGTCACTACACTATTGGAAAGGAAATCATTGACCTGGTGCTGGACAGGATTCGCAAACTGGCTGACCAATGCACAGGTCTCCAGGGTTTCCTGGTCTTCCACAGCTTTGGTGGTGGCACTGGTTCTGGCTTCACCTCTCTGCTGATGGAGCGTCTGTCTGTCGACTACGGCAAGAAGTCCAAGCTTGAGTTCTCCATCTACCCCGCTCCTCAGGTCTCCACCGCTGTGGTAGAGCCTTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCCTTCATGGTAGACAATGAGGCCATTTATGATATCTGCCGTAGGAACCTTGACATTGAGCGCCCTACTTACACCAACCTCAACAGGCTAATTGGCCAGATTGTGTCCTCCATCACAGCCTCCCTTAGGTTTGATGGTGCCCTCAATGTGGATCTCACTGAGTTCCAGACCAACTTGGTGCCCTATCCTCGTATCCACTTCCCTCTGGCTACCTATGCCCCAGTGATCTCCGCAGAGAAGGCTTACCATGAGCAGCTCTCTGTGGCTGAAATCACCAATGCTTGCTTCGAGCCGGCCAATCAGATGGTCAAATGCGACCCACGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGTGACGTGGTGCCCAAAGATGTGAACGCCGCAATCGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTGGACTGGTGTCCCACTGGTTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTTCCAGGTGGTGATCTGGCTAAAGTGCAGAGGGCCGTGTGCATGCTGAGCAACACCACAGCTATTGCTGAGGCCTGGGCTCGTCTGGATCATAAGTTTGATCTGATGTACGCCAAGCGCGCCTTTGTGCACTGGTACGTGGGTGAGGGTATGGAGGAGGGCGAGTTCTCTGAGGCCAGGGAGGACATGGCTGCCCTGGAGAAAGATTATGAGGAGGTTGGTGTCGACTCCATCGAGGGTGAGGGAGAGGAAGAGGGCGAGGAATATTAAGTGACACAAATAACATGCAGGAATCATGAAATTCAAACAGTGAAAATTGGACAACCAATGGAATTATGATGGTACAGTTCTTTGAGCTGAAATAAACCTCCTTTCCAAACTA

Function

symbol description
tuba1a Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within negative regulation of apoptotic process and optic nerve formation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in lissencephaly; lissencephaly 3; microcephaly; and visual epilepsy. Orthologous to human TUBA1A (tubulin alpha 1a).

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0021634 optic nerve formation biological_process
GO:0007017 microtubule-based process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090507-4 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within negative regulation of apoptotic process and optic nerve formation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in lissencephaly; lissencephaly 3; microcephaly; and visual epilepsy. Orthologous to human TUBA1A (tubulin alpha 1a).

Ensembl:

ensembl_id ENSDARG00000001889

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043313 True 1537 mRNA 0.53 4 35708730 35711398

Neighbor

gene id symbol gene type direction distance location
XLOC_021848 NA coding upstream 6009 35694272 ~ 35702721 (+)
XLOC_021847 pmelb coding upstream 18394 35672542 ~ 35690336 (+)
XLOC_021846 ccnt1 coding upstream 44225 35650771 ~ 35664505 (+)
XLOC_021845 NA coding upstream 148218 35557190 ~ 35560512 (+)
XLOC_021844 acp1 coding upstream 171003 35504824 ~ 35537727 (+)
XLOC_021850 tuba1b coding downstream 2159 35713557 ~ 35716519 (+)
XLOC_021851 NA coding downstream 12040 35723438 ~ 35727522 (+)
XLOC_021852 NA coding downstream 17857 35729255 ~ 35730062 (+)
XLOC_021853 gdap1l1 coding downstream 48445 35759843 ~ 35782365 (+)
XLOC_021854 BX465853.1 coding downstream 79410 35790808 ~ 35798279 (+)
XLOC_021843 NA non-coding upstream 221155 35484894 ~ 35487575 (+)
XLOC_021841 CU459147.1 non-coding upstream 500344 35195740 ~ 35208386 (+)
XLOC_021838 CR352218.1 non-coding upstream 721367 34849715 ~ 34987363 (+)
XLOC_021861 mir196a-1 non-coding downstream 376693 36088091 ~ 36088196 (+)
XLOC_021866 dre-mir-10b-2 non-coding downstream 418603 36130001 ~ 36130092 (+)

Expression


Co-expression Network