XLOC_021852


Basic Information

Item Value
gene id XLOC_021852
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35729255 ~ 35730062 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044872
GCGCTCTGCTGCCCCCTCTAGCTCTGGAGCTGACTGATACAGAAGGTAGGTTTATGTACTCTGAAGATTTGTGTAGTCTGTGGTAAATTTATCTTAACTTGCTTTTTATTAACTCCTAAGTTGaggctatttttatttatcattccTGGCAGCTGTTATCCTGTCATGCTCAAAGTtgtatcacaaaaaaaaattgatgaCAGAATAACCATAACAGTTTTTCGGCTATTTTAGATTTGATTAAAATTCTTTACGGGTGCTGATAATTTTGAGATAATTGGAAATGCATGCATATTTGAGGGTATACTTGAGTGTATATTTAAATTTAGTGCCTCGCGGCCTGACGTTGAATAGTTATCACATATTTTCACAAAAAAGCGAAAGACtgtaatgcaaaaaaaagaacaacatcTTAACAAGTTCAGGTCATAAAAAGCAAATACAGGCTCACAATAACATCCcatgtttattattaaaacaggcgatatataatataattacgcATTTAATTAGGCGAACTATAATTACGCATGTTTTGTTGTGCTCTTCTACAGTTTCATCTAAGATGGTTGAGACAGACGGTGCCAAAATAAAACCGTCAAGAGCTTAGCAGTGCCATTCAGATGGACAGACTGAAGAACACGGTGAGCTGCTGAAGGGCCTGTGTCCCAGCAATCTAATCATGTTTCAGACACTCAGAGCAGTTTAAATGAGGGTTTTCCGGGCTCGAGATTTCAATAGCATGTAGTTTGTTCTGAAATGAGTGCTGTAACTCGGACTTTGTGTAGATTAATGATCACACCTGCTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044872 True 808 lncRNA 0.37 1 35729255 35730062

Neighbor

gene id symbol gene type direction distance location
XLOC_021851 NA coding upstream 1733 35723438 ~ 35727522 (+)
XLOC_021850 tuba1b coding upstream 12736 35713557 ~ 35716519 (+)
XLOC_021849 tuba1a coding upstream 17857 35708730 ~ 35711398 (+)
XLOC_021848 NA coding upstream 26534 35694272 ~ 35702721 (+)
XLOC_021847 pmelb coding upstream 38919 35672542 ~ 35690336 (+)
XLOC_021853 gdap1l1 coding downstream 29781 35759843 ~ 35782365 (+)
XLOC_021854 BX465853.1 coding downstream 60746 35790808 ~ 35798279 (+)
XLOC_021855 rarga coding downstream 117138 35847200 ~ 35963735 (+)
XLOC_021856 hoxc10a coding downstream 239166 35969228 ~ 36086895 (+)
XLOC_021857 hoxc13a coding downstream 322882 36052944 ~ 36055886 (+)
XLOC_021845 NA non-coding upstream 168743 35557190 ~ 35560512 (+)
XLOC_021843 NA non-coding upstream 241680 35484894 ~ 35487575 (+)
XLOC_021841 CU459147.1 non-coding upstream 520869 35195740 ~ 35208386 (+)
XLOC_021861 mir196a-1 non-coding downstream 358029 36088091 ~ 36088196 (+)
XLOC_021866 dre-mir-10b-2 non-coding downstream 399939 36130001 ~ 36130092 (+)
XLOC_021868 BX005254.2 non-coding downstream 420368 36150430 ~ 36154411 (+)
XLOC_021871 NA non-coding downstream 587287 36317349 ~ 36317913 (+)

Expression


Co-expression Network