XLOC_021858 (hoxc12a)


Basic Information

Item Value
gene id XLOC_021858
gene name hoxc12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36063599 ~ 36065182 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043325
ATGGGCGAGCATAATCTTCTTAATCCTGGGTTTGTGGGACCTTTGGTAAACATCCACACTGGAGACAGGTTTTACTTCCCGAATTTTAGAGCCTCAGGGGGACAGCTGGCGGGGCTACCGTCTCTCTCGTACCCTAGAAGGGACAATGTTTGCTCTCTCCCGTGGAATCCATCGGAGTCGTGCAATGGATATCCTCAGTCTTACTTTAGCAGTCCCGTATCTATTAACCCCTCTTTTAATCGATCTTGTGAAATAACCCGACTGGAGGAAAGCAAGTGTTATTATGGCAATTCCAGCAGCACCAGAGATTCGTGTTCAGACAACAACAGTCTCAAACGAGAGGAGCGAGCAAGAGATACATCAGTATCGTCTGATCACGGGATGCACAATGGGATGGGCAACAGTGGCACCTTCTCAAAGTATGATTATGGCACCGAACATCTGACCCAAGACCCGCCATCCTGTCAGTCTTTGGAGTCCGACTCCAGTTCTTCGGTGCTAAACGAAGGAGGAAAGACTTCAGCAAGCGACCCACAAACCCTGGTATCGCAAGGAAACCACGCAAGCAATATCGCCGGTGGAGGAGGTGCCCCGTGGTACCCGATGCACACCCGGACCCGCAAGAAACGAAAACCCTATTCCAAACTGCAACTGGCCGAGCTTGAAGGAGAATTCATGCTGAACGAGTTCATCACCAGACAGCGACGTAGAGAGCTGTCTGACAGGCTCAATCTCAGCGACCAACAGGTTAAaatttggttccaaaatcggcgGATGAAGAAAAAGAGACTGTTGCTGAGGGAACAGGCTTTGTCCTTCTTTTAA

Function

symbol description
hoxc12a Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human HOXC12 (homeobox C12).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000822-6 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human HOXC12 (homeobox C12).

Ensembl:

ensembl_id ENSDARG00000070352

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043325 True 825 mRNA 0.50 2 36063599 36065182

Neighbor

gene id symbol gene type direction distance location
XLOC_021857 hoxc13a coding upstream 7713 36052944 ~ 36055886 (+)
XLOC_021855 rarga coding upstream 99864 35847200 ~ 35963735 (+)
XLOC_021854 BX465853.1 coding upstream 265320 35790808 ~ 35798279 (+)
XLOC_021853 gdap1l1 coding upstream 281234 35759843 ~ 35782365 (+)
XLOC_021852 NA coding upstream 333537 35729255 ~ 35730062 (+)
XLOC_021859 hoxc11a coding downstream 9616 36074798 ~ 36078132 (+)
XLOC_021860 hoxc3a coding downstream 22037 36087219 ~ 36149371 (+)
XLOC_021861 mir196a-1 coding downstream 22909 36088091 ~ 36088196 (+)
XLOC_021862 hoxc9a coding downstream 30078 36095260 ~ 36097488 (+)
XLOC_021863 hoxc8a coding downstream 36003 36101185 ~ 36103635 (+)
XLOC_021851 NA non-coding upstream 336077 35723438 ~ 35727522 (+)
XLOC_021848 NA non-coding upstream 360878 35694272 ~ 35702721 (+)
XLOC_021845 NA non-coding upstream 503087 35557190 ~ 35560512 (+)
XLOC_021866 dre-mir-10b-2 non-coding downstream 64819 36130001 ~ 36130092 (+)
XLOC_021868 BX005254.2 non-coding downstream 85248 36150430 ~ 36154411 (+)
XLOC_021871 NA non-coding downstream 252167 36317349 ~ 36317913 (+)
XLOC_021872 NA non-coding downstream 253996 36319178 ~ 36319588 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_02339253_02340813 HOXC12AB, HOXC12A, HOXC12AA, HOXC12BA, HOXC12 coding CI01000001 null 2339253 ~ 2340813 (-)
bowfin (Amia calva) AMCG00008803 NA coding CM030126.1 CM030126.1 12358727 ~ 12359365 (+)