XLOC_021859 (hoxc11a)


Basic Information

Item Value
gene id XLOC_021859
gene name hoxc11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36074798 ~ 36078132 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043326
GTGTTGCGGGGCGACTTAGACGGATTGCGCGTCATCTCGCCTTCCCAAATTTTCTCCTTCTGCAGCTCGAATCCAAAACATCATATCTGTAGTACGGACTACAGGAGAAAGATGTTTAACTCTGTTAATCTGGGCAACTTCTGCTCCCAGACGCGTAAAGACCGGACGTCCGAGTTTGGGGACAGGACGGGCTGTGCCTCCAACATCTACCTCCCCAGCTGCACTTACTACGTTCCTGAATTTTCCGCCGTCTCTTCGTTCCTTCCACAGGGGCCCTCGCGACAAATCACATACCCATATTCCACAAATCTATCTCAAGTGCAACCGGTACGAGATGTTTCCTATGGTTTGGACCCGTCCAGCAAGTGGCACCACAGATCCAACTATGCATCTTGCTACTCAGGAGAAGACCTGGTGCATAGAGACTGTCTTCCGCCATCCACCATGACAGAAATGCTCATGAAAAACGAGAGTGTGTACAGCCACCACCACCAGCATCATCCGAACTCTAGCCACCCTTCCACCGGGTTCTACACCGGCGTGGGGAAAAACAACGTGCTCCCTCAAGGTTTTGACCGTTTCTTTGAAACCGCTTATTGTAGTACGGACAATCAGTCAGAACATTGTTTACAAAAGAGCGAGATGAACAAATTAGAGACTTCGTCCCAGCAACCCACAGCTGTTTCCGCAGCACGAGAGCCGGAAAAGGACCCAGAGGATGAGGAGGAACACACAAATTCGGGCTCGTGCACTTCAGCAGCTACTAAGGACGGGAACGCAAGCAAGAGCAGCCATTCGAGTAGAAAGAAGAGATGTCCATACTCCAAATTTCAGATTCGTGAACTGGAGCGAGAATTTTTCTTTAACGTTTACATCAACAAGGAGAAAAGGCTACAGCTATCCAGAATGTTAAACCTTACTGACAGACAAGTCAAAATATGGTTTCAAAATCGTAGaatgaaagaaaagaaattaaGCAGAGATCGCCTGCAGTATTTCTCTGGAAATCCGTTGCTGTAATTGTTGAAATGGCGTTGcctgttatttaatatttttgcaaaCAAACTCTATTAAATATGTCAAATATGCCCTTCagtctaattaaataattagatatgTTTTTGTCTAGGCCAGCAACAGTACTGAAGAAGCCTAAGACAGTTGGAGGCTAACAGGATTGTAATGGCTGAGGGTGGGGACAGACAATACAAATTTGCTTAATGTCAAACTGATATTTCAAGTTTAAAGTTCACAAACCAAAACGTAATCTTCACAAACTTAAGGTTTCTATTTGTTTGTGACCCGtcttttaagtgaaaataattaaaatattcacTTTGAATAAGGCGACAAAATAGCCtactataatatattataaaattgtaCCCTTATCATTTTATGCTTGTATATATGTACATTAAAACACACTCTCGACTCTGGTTTAAATCTGGAGATGTCatacttttttatgttttcacCATTTAGAACTGTGACTTGTACAATCTGTAATAATGTATTCCTTGTACAGAGATTATGCATTGTGCATTCGTGAATGTAAATATAATGTTATTTTGAGTATCCTCAACTTATCCCTGCTGCTATATTTCTTTACATTGCCTTTGCAGCCTTGTGAGCTTTGTTGttcaattctttaaattatttgctGTACGCCCAAAGttctctatctttttttttttcttaaggggAAGTTCGGCGGTCCGATTTGGCCTGTGTACTGcgtattaatcaaaaataaacacGAATAAAGGTAAACTGTTACATGTCACTGTGACttgatttttaaaactaataataattatggaAAATAAGATGATTAATCAATAGGAAAGTCTATGGTGAGGAATGTAGTGATGTGTACAACACTGCCGAGACCCAAGAGAAGGTAGAAACTGACCActatatcaagaaaaaaaattaaataatctatttctctc
>TCONS_00043327
ATATCTGTAGTACGGACTACAGGAGAAAGATGTTTAACTCTGTTAATCTGGGCAACTTCTGCTCCCAGACGCGTAAAGACCGGACGTCCGAGTTTGGGGACAGGACGGGCTGTGCCTCCAACATCTACCTCCCCAGCTGCACTTACTACGTTCCTGAATTTTCCGCCGTCTCTTCGTTCCTTCCACAGGGGCCCTCGCGACAAATCACATACCCATATTCCACAAATCTATCTCAAGTGCAACCGGTACGAGATGTTTCCTATGGTTTGGACCCGTCCAGCAAGTGGCACCACAGATCCAACTATGCATCTTGCTACTCAGGAGAAGACCTGGTGCATAGAGACTGTCTTCCGCCATCCACCATGACAGAAATGCTCATGAAAAACGAGAGTGTGTACAGCCACCACCACCAGCATCATCCGAACTCTAGCCACCCTTCCACCGGGTTCTACACCGGCGTGGGGAAAAACAACGTGCTCCCTCAAGGTTTTGACCGTTTCTTTGAAACCGCTTATTGTAGTACGGACAATCAGTCAGAACATTGTTTACAAAAGAGCGAGATGAACAAATTAGAGACTTCGTCCCAGCAACCCACAGCTGTTTCCGCAGCACGAGAGCCGGAAAAGGACCCAGAGGATGAGGAGGAACACACAAATTCGGGCTCGTGCACTTCAGCAGCTACTAAGGACGGGAACGCAAGCAAGAGCAGCCATTCGAGTACCCCGCGCACAAGAAAGAAGAGATGTCCATACTCCAAATTTCAGATTCGTGAACTGGAGCGAGAATTTTTCTTTAACGTTTACATCAACAAGGAGAAAAGGCTACAGCTATCCAGAATGTTAAACCTTACTGACAGACAAGTCAAAATATGGTTTCAAAATCGTAGaatgaaagaaaagaaattaaGCAGAGATCGCCTGCAGTATTTCTCTGGAAATCCGTTGCTGTAATTGTTGAAATGGCGTTGcctgttatttaatatttttgcaaaCAAACTCTATTAAATATGTCAAATATGCCCTTCagtctaattaaataattagatatgTTTTTGTCTAGGCCAGCAACAGTACTGAAGAAGCCTAAGACAGTTGGAGGCTAACAGGATTGTAATGGCTGAGGGTGGGGACAGACAATACAAATTTGCTTAATGTCAAACTGATATTTCAAGTTTAAAGTTCACAAACCAAAACGTAATCTTCACAAACTTAAGGTTTCTATTTGTTTGTGACCCGtcttttaagtgaaaataattaaaatattcacTTTGAATAAGGCGACAAAATAGCCtactataatatattataaaattgtaCCCTTATCATTTTATGCTTGTATATATGTACATTAAAACACACTCTCGACTCTGGTTTAAATCTGGAGATGTCatacttttttatgttttcacCATTTAGAACTGTGACTTGTACAATCTGTAATAATGTATTCCTTGTACAGAGATTATGCATTGTGCATTCGTGAATGTAAATATAATGTTATTTTGAGTATCCT

Function

symbol description
hoxc11a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in neural tube; tail bud; and ventral mesenchyme. Orthologous to human HOXC11 (homeobox C11).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-111 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in neural tube; tail bud; and ventral mesenchyme. Orthologous to human HOXC11 (homeobox C11).

Ensembl:

ensembl_id ENSDARG00000070351

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043326 False 1955 mRNA 0.40 2 36074798 36078132
TCONS_00043327 True 1512 mRNA 0.42 2 36074880 36077759

Neighbor

gene id symbol gene type direction distance location
XLOC_021858 hoxc12a coding upstream 9616 36063599 ~ 36065182 (+)
XLOC_021857 hoxc13a coding upstream 18912 36052944 ~ 36055886 (+)
XLOC_021855 rarga coding upstream 111063 35847200 ~ 35963735 (+)
XLOC_021854 BX465853.1 coding upstream 276519 35790808 ~ 35798279 (+)
XLOC_021853 gdap1l1 coding upstream 292433 35759843 ~ 35782365 (+)
XLOC_021860 hoxc3a coding downstream 9087 36087219 ~ 36149371 (+)
XLOC_021861 mir196a-1 coding downstream 9959 36088091 ~ 36088196 (+)
XLOC_021862 hoxc9a coding downstream 17128 36095260 ~ 36097488 (+)
XLOC_021863 hoxc8a coding downstream 23053 36101185 ~ 36103635 (+)
XLOC_021864 hoxc6a coding downstream 37409 36115541 ~ 36116907 (+)
XLOC_021852 NA non-coding upstream 344736 35729255 ~ 35730062 (+)
XLOC_021851 NA non-coding upstream 347276 35723438 ~ 35727522 (+)
XLOC_021848 NA non-coding upstream 372077 35694272 ~ 35702721 (+)
XLOC_021845 NA non-coding upstream 514286 35557190 ~ 35560512 (+)
XLOC_021866 dre-mir-10b-2 non-coding downstream 51869 36130001 ~ 36130092 (+)
XLOC_021868 BX005254.2 non-coding downstream 72298 36150430 ~ 36154411 (+)
XLOC_021871 NA non-coding downstream 239217 36317349 ~ 36317913 (+)
XLOC_021872 NA non-coding downstream 241046 36319178 ~ 36319588 (+)

Expression


Co-expression Network