XLOC_021863 (hoxc8a)


Basic Information

Item Value
gene id XLOC_021863
gene name hoxc8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36101185 ~ 36103635 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043333
ACATCCACCGTGCACGCCATGATTTGAGGCTGCAAAAGGAAAGGCTGGCGataggaagagagagagagagagactaagcGAAAGGAGCTGAAGTGGGAGCTGCCTCAGATTGTCCGAAGGGGCAGCATTTCTCCATCTAGTTCCGGTTGCTGTGTCTGCGTTGCATGCCATTTGGAACTGCAACAATAGGTTGCCACCATTAGGAGAGGagaatacatatattttttccaaACAGACTGACTCTTTTTAATGCTAGATAAACATGAGCTCTTATTTTGTTAACCCTCTTTTTTCCAAGTACAAAGGCGGCGAAACATTAGAGCCAACTTACTACGACTGCAGGTTTCCACAGAGCGTTGCCCGAAGCCACACGCTTGTGTACGGACATGGAGCAGCTGCGCCGGGGTTTCAACACCCGTCGCATCACGTACAGGACTTTTTCCATCACGGAACCACAGGTATCTCCAACCCTGGGTATCAACAGAACCCCTGTGCATTGGCATGTCACGGAGACGCTACGAAATTTTATGGATATGAAGCCCTTCCGAGGCAACCGCTTTATGGTACCCAGCAAGAGGCCACCTTAGCGCAATACCCAGACTGTAAATCGTCCAATAGCACTAACCCTGGAGAAGGACAAGGCCACTTAAGTCAAAACTCCTCTCCGAGCCTCATGTTCCCTTGGATGCGGCCTCACGCTCCTGGGAGACGCAATGGAAGGCAGACATACAGCCGATACCAGACATTGGAGCTGGAGAAAGAGTTCCTCTTCAACCCATACCTCACACGCAAGCGCCGTATTGAAGTGTCCCACGCGCTAAGCTTAACTGAACGACAGGTGAAGATCTGGTTTCAGAATCGCCGAATGAagtggaaaaaagaaaataacaaagacAAATTTCCGGGGCAGAGAGGAGAGGCTGAAGCAGAGGCCGAAGAAGAGGGCAATGAAGACGGTGAAGCGGAGGAAGGAGAAGACAAGGAAACGGAAGAGAAAGAGGAAAGCAAGGAGTGATTTTATGGTCTTTTTTATGGTTATATGGCAGATATTGAAGAGGTCTCACGAATGGGAAATGAAAGAGAAGACGCGCCAATTTTATTACAAACAGTTGGGTCAAAAAGTGAGAAAATCCCCCTCCATACAAATGTACATTGAAACCTGCCCAAAGAAAAAAGGCTTCTTTTT

Function

symbol description
hoxc8a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic pectoral fin morphogenesis; endocrine pancreas development; and exocrine pancreas development. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; fin; mesoderm; nervous system; and somite. Orthologous to human HOXC8 (homeobox C8).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0007275 multicellular organism development biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-114 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic pectoral fin morphogenesis; endocrine pancreas development; and exocrine pancreas development. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; fin; mesoderm; nervous system; and somite. Orthologous to human HOXC8 (homeobox C8).

Ensembl:

ensembl_id ENSDARG00000070346

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043333 True 1186 mRNA 0.48 2 36101185 36103635

Neighbor

gene id symbol gene type direction distance location
XLOC_021862 hoxc9a coding upstream 3697 36095260 ~ 36097488 (+)
XLOC_021861 mir196a-1 coding upstream 12989 36088091 ~ 36088196 (+)
XLOC_021856 hoxc10a coding upstream 14290 35969228 ~ 36086895 (+)
XLOC_021864 hoxc6a coding downstream 11906 36115541 ~ 36116907 (+)
XLOC_021865 hoxc5a coding downstream 15103 36118738 ~ 36120511 (+)
XLOC_021866 dre-mir-10b-2 coding downstream 26366 36130001 ~ 36130092 (+)
XLOC_021867 hoxc4a coding downstream 27248 36130883 ~ 36132563 (+)
XLOC_021868 BX005254.2 coding downstream 46795 36150430 ~ 36154411 (+)
XLOC_021854 BX465853.1 non-coding upstream 302906 35790808 ~ 35798279 (+)
XLOC_021852 NA non-coding upstream 371123 35729255 ~ 35730062 (+)
XLOC_021851 NA non-coding upstream 373663 35723438 ~ 35727522 (+)
XLOC_021848 NA non-coding upstream 398464 35694272 ~ 35702721 (+)
XLOC_021871 NA non-coding downstream 213714 36317349 ~ 36317913 (+)
XLOC_021872 NA non-coding downstream 215543 36319178 ~ 36319588 (+)
XLOC_021874 NA non-coding downstream 261270 36364905 ~ 36365917 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_02301569_02304543 HOXC8, HOXC8AB, HOXC8AA, XHOXC8, HOXC8A, HOXC8BA, HOXC8.S coding CI01000001 null 2301135 ~ 2304572 (-)