XLOC_021871


Basic Information

Item Value
gene id XLOC_021871
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36317349 ~ 36317913 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044680
CACCTGTGGTACTAACCACTGCACTAAAGTACACATAAGCCAACGGTAACAAACATTCAACAATTAAACTCCATTTACCTTCTTTACATTCATTTCTCTAATATTAAATGTCTGTGACCAAAATCTGTGACCAAATGTTTAGTTTCTAATTAAAAATACAGGAAAGagcaaatatacagttaaagtcagaattattagacccctgaattattagccccccctgtttattttttccccccaatttctgtttaacgaggaaaaggtttttttttcaacacatttctaaacataatagttttaataactcatttctaataactgatttattttatctttgccatgatgataataaataatatttgactagatattttaacttctatacagcttaaagtgacatttaaaggcttaactaggttaattaggttaactaggcaggttaaggtaattaggtaagttattgtataacgatggtttgttctgcagactactgaaaaatatagcttaaaggggctaataattttgtccttaaaatggttttttaaaaattaatagctgcttttat

Function

GO:

id name namespace
GO:1905332 positive regulation of morphogenesis of an epithelium biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044680 True 565 lncRNA 0.29 1 36317349 36317913

Neighbor

gene id symbol gene type direction distance location
XLOC_021870 hnrnpa1b coding upstream 6931 36306539 ~ 36310418 (+)
XLOC_021869 hoxc1a coding upstream 126361 36178104 ~ 36190988 (+)
XLOC_021868 BX005254.2 coding upstream 162938 36150430 ~ 36154411 (+)
XLOC_021867 hoxc4a coding upstream 184786 36130883 ~ 36132563 (+)
XLOC_021866 dre-mir-10b-2 coding upstream 187257 36130001 ~ 36130092 (+)
XLOC_021872 NA coding downstream 1265 36319178 ~ 36319588 (+)
XLOC_021873 copz1 coding downstream 22607 36340520 ~ 36354106 (+)
XLOC_021874 NA coding downstream 46992 36364905 ~ 36365917 (+)
XLOC_021875 NA coding downstream 100206 36418119 ~ 36420278 (+)
XLOC_021876 NA coding downstream 140434 36458347 ~ 36488629 (+)
XLOC_021861 mir196a-1 non-coding upstream 229153 36088091 ~ 36088196 (+)
XLOC_021854 BX465853.1 non-coding upstream 519070 35790808 ~ 35798279 (+)
XLOC_021852 NA non-coding upstream 587287 35729255 ~ 35730062 (+)
XLOC_021877 FO704757.1 non-coding downstream 173201 36491114 ~ 36491234 (+)
XLOC_021860 hoxc3a coding upstream 167978 36087219 ~ 36149371 (+)

Expression


Co-expression Network