XLOC_021873 (copz1)


Basic Information

Item Value
gene id XLOC_021873
gene name copz1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36340520 ~ 36354106 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043348
CGTAAGCGGATGTACGAATACGCAAGAATTCAACGCACGAAGGAAGAGCGAGCGACATCTGTACAGTACAAGATGGATACGCTAATATTgGAGCCTTCtctgtacactgtaaaagcggTTCTGATCATGGATAATGATGGAGAGAGACTGTATGCAAAGTATTATGATGACACGTATCCCACAGTGAAAGAGCAGAAAGCCTTTGAGAAGAACATCTTTAACAAGACGCACAGAACAGACAGTGAAATCGCGTTGCTGGAGGGTCTAACGGTTGTGTACAAGAGCAATATTGATTTATATTTCTATGTAATTGGCAGCTCTCATGAAAATGAGCTGATGCTTATGTCAGTGTTGAATTGTCTCTTTGATTCTCTGAGCCAAATGCTGAGgaaaaatgtggaaaagagAGCCCTGCTGGAAAATATGGAGGGTCTTTTCTTGGCCGTTGATGAGATTGTTGATGGAGGaGTGATTCTGGAGAGCGACCCACAGCAGGTGGTTCACCGTGTCGCATTGAGGGGCGATGACGTGCCTCTGACAGAACAGACAGTCACTCAGgtGCTACAGTCAGCGAAGGAGCAGATCAAATGGTCTCTCCTGCGATAGGATTCTTCAGCTTTCTGTCCTGAACTGAAGCGAGGAAAAGCAATGAGAGAGCACCTCTTTTCATCACTACTGTCCCTTTCTGCCCTTTTCTCCGTGAGTGTTTTCATGACTGTTAAAGTGCACATCCACTGAAAACCACTTCTCCAGTTTCTCTCACTCCAGATAAGACCAGCAACAGCGCTATTTCTACACATTAACACAAGAGGAAGAAGCTTGCCGGGACTTTCTTTTTGGGAAAAGTACCGgggcgtttgtttttttttaaagcccatTCCAGTAAGCGCTTGAATATATGGCTGGTTTAGTGAATGATATCACTGTTGTACTGTGAGATTTTCATGAGGATTCATGTACATTCCAGTGGTCGATCTTTTCTCTGTTTTTGGATTGAAGTAAAGAGTTTCATCCCA

Function

symbol description
copz1 Acts upstream of or within lens development in camera-type eye. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPZ1 (COPI coat complex subunit zeta 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0030117 membrane coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-000406-6 Acts upstream of or within lens development in camera-type eye. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPZ1 (COPI coat complex subunit zeta 1).

Ensembl:

ensembl_id ENSDARG00000017844

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043348 True 1016 mRNA 0.44 9 36340520 36354106

Neighbor

gene id symbol gene type direction distance location
XLOC_021872 NA coding upstream 20932 36319178 ~ 36319588 (+)
XLOC_021871 NA coding upstream 22607 36317349 ~ 36317913 (+)
XLOC_021870 hnrnpa1b coding upstream 30102 36306539 ~ 36310418 (+)
XLOC_021869 hoxc1a coding upstream 149532 36178104 ~ 36190988 (+)
XLOC_021868 BX005254.2 coding upstream 186109 36150430 ~ 36154411 (+)
XLOC_021874 NA coding downstream 10799 36364905 ~ 36365917 (+)
XLOC_021875 NA coding downstream 64013 36418119 ~ 36420278 (+)
XLOC_021876 NA coding downstream 104241 36458347 ~ 36488629 (+)
XLOC_021877 FO704757.1 coding downstream 137008 36491114 ~ 36491234 (+)
XLOC_021878 NA coding downstream 231073 36585179 ~ 36585751 (+)
XLOC_021866 dre-mir-10b-2 non-coding upstream 210428 36130001 ~ 36130092 (+)
XLOC_021861 mir196a-1 non-coding upstream 252324 36088091 ~ 36088196 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_02141590_02142836 COPZ1, COPZ1.L, COPZ1-B coding CI01000001 null 2141560 ~ 2142986 (-)