XLOC_021888 (cptp)


Basic Information

Item Value
gene id XLOC_021888
gene name cptp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37086159 ~ 37094205 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043360
ATCCAGGAAGAGATGGTCGGAAGGAAAGCAAAGCGTCAGTGATATGATCCCACTGAAGAGCACATAAGATATTTTTACACTAATTAATATTTAAGGACGTTTATTCCTTTCTAAATCTGAAGGATTTATATACTATTTCCTGGCAGTCGATAAAGAGAGAAGAGAATGGCAGACGCATTCAGTCTTCAGAGGGTGTTAGAAACATTCAGGTCAAGTCTGAGTGAAAATAAGGAGGtttacattaaatattacatAGCAGGATGGCAAGAGCTCGTCAGCTTCATGAATAGCCTGGGCAACGTCTTTTCCTTCATCTCCAAGGACGTGGTCAGCAAAATCCAGATCTTAGAGAACTTCCTTTCAGGAGAGAACGGATCCCATTACGTCACCATCCAGTCCATGGTCAAATATGAGCTGGAGAACGACCTGGTGGACCTCACCAAAAGAGGCAGCCATCCAGAATCGGGTTGTCGGACTCTCCTGCGGCTCCACCGGGCTCTTCGCTGGCTGGAGCTCTTCCTGGAGAGACTGCGCACCAGCACAGAGGACAGCAAGACCTCCGTCATGTGTTCTGATGCCTATAATGAGTCTCTAGCCAACCATCACCCCTGGCTCATCCGGAAAGCTGTCGGCGTGGCGTTTTGTGCCCTTCCAGGACGCGAAACCTTCTTTGACGTGATGAATGCAGGAGATCATACACAGGTGGTTGCTCTGCTTGGAGAGTCTTTGCCTCTTATCGCTGAAGTCTATCAGATTACAGAAGACTTGTATGCCAAGAACAACCTCCTGGAGTTACCATAGATGTATTTTTATGTCTTCTACATAATCCCTGTGGCACTTACTCACTTATTTACCACAAATGTAGACTTGTTTTCTGAAGGGACATGCAATATGcaggtttaatgcacattttaaagggaTAACTCACCCAAAATTAGTATTTACACACTGTTTACTCtttctcaagtggttctaaaactTTTCAGAGTTTAtttgaatacaaaagaaaaaattttGATGACAAGTAGTAACCATCGACTTCAGTAGAGGGAAAACAagtactatggaaatcaatggttacaggtaaatagtgagtacatttttgggtgaactgcccctttaagcaGGGTTCAGGTCATTTATCTTATCAGCTACTCTACACTACATTCTGATTACTGATATTTGTAAAATACACaggctgtattttaatatatacttGAGCGTAGGGAACaaaatgaatgtattgttttggtTTGAAGGATGATAgagatatatatttaattttgaaatgctgtatatttgaatatatagGTGATTTCTTTGTTCCTCTTGATGTTGATAATTTTATTGGAAGGGTTTTTCCAATTATTTGAATTCATGTTGAATGTGGGTGTTACACCTACAGCTTTGCTGAAACTACAAAGAGGGAAATGGGGCTGTATATGCAATAATAGACTGTGTAATGTTATGGTAactataaaataactgaataaaattGATGGAATCTG
>TCONS_00043361
GAAGAGATGGTCGGAAGGAAAGCAAAGCGTCAGTGATATGATCCCACTGAAGAGCACATAAGATATTTTTACACTAATTAATATTTAAGGACGTTTATTCCTTTCTAAATCTGAAGGATTTATATACTATTTCCTGGCAGTCGATAAAGAGAGAAGAGAATGGCAGACGCATTCAGTCTTCAGAGGGTGTTAGAAACATTCAGGTCAAGTCTGAGTGAAAATAAGGAGGtttacattaaatattacatAGCAGGATGGCAAGAGCTCGTCAGGAAGCGTCGCCAAGGACACACAAGCGCGTCTTCAACACTGGCGACTGAAGTGAAAATGCCTCACTTTCCCTCTTCAACAACGACTGAAAAAAGCAGAATAACATAATAAAGTTTCAATGTCCTCTGGAGAAAGGATGCACGTGACCAGGCCCAAGTCTTCAAAAGGACGCAGCAGACCCATGATAACTAACTCTTCAATGATCTACACACCTTCCCAGCCCTCAG
>TCONS_00043362
ACAAGCGCGTCTTCAACACTGGCGACTGAAGTGAAAATGCCTCACTTTCCCTCTTCAACAACGACTGAAAAAAGCAGAATAACATAATAAAGTTTTCAATGTCCTCTGGAGAAAGGATGCACGTGACCAGGCCCAAGTCTTCAAAAGGACGCAGCAGACCCATGATAACTAACTCTTCAATGATCTACACACCTTCCCAGCCCTCAGCTCTTTCCCCACAACCTCCAGCCGCCGCCAAGACCAAAGACAAGTCAAACCAAAGCCTCCGATCCCGAGCCATTCTGAGGCGCAGCAGTCAACCAACAACAGACATATTGACTGAAGCCTACGACAGACCCCCGGAAGAGCCCGTCTCTCTCAACAGATACAGAGTTCTGCCATCCATTGAGAAAAAAACCAGTACGGACAACCAGAAGTGCAGTCAATGTGTCAGCAGGCATAGGAAATGTCAACACACAAATGCCAGACTGGATGTGGTTTCAGATTCAACTCCTCCTGAGGAATCAGACCTTCTGCTTGCTATCAGAACTCCATGCGGACAGAGATTTAAGCGCAGTTTTCGGCCATCAGACCAGCTGAAGGGGGTGCTATCGGCTGCCGAGGCTGAATTTGGAGACAGGTTTGATAATTGTATTATTGAGACTATGGATGTGCCGCGCAGGACTTTTTCTAACCTTACGATGACCTTGGCTCAGTGTGGCGTGCTAAACAAATCGGTTTTATGCATTTCCCATGATGACAGCGAAATGGATTTAACTTGAAACGTGGTTGTAGTGTAACCTTTTATGGAGATGCAGCAACACTCAAATTGTTTAGATTTACgcacatacatttaaatacaacGGTTTTAGATTTGCATTTCAAATTATGAGTCACGTTCTTCCTGATTAAACCTGTGTGGATAAATGTTAATTTGTccaatctaatttaaaaaaagtttaggattcatttataaataatattggttGTCCGAAATATAAAAAATTACTTGATGAAAACAAATAAGATGATTAAAATGTAAGAAATGGTTTGTAttatattaacataaaaaaatctgaGGAAAATGTGTTATTAGAGAGATTTAGATGAACATGttatatattatagataaaatatatattttgcttataaaaaataaacctaTTTCCTTGACCACGGAGACTTTTtccagtgaatgaatgaatgaatttacagtgcatccagaaagtattcatggagcttcactttttcctcatttgtttatattacagccttattccaatgtgaattaaattcatttatttcctcaa

Function

symbol description
cptp Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in several processes, including lipid transport; negative regulation of NLRP3 inflammasome complex assembly; and negative regulation of interleukin-1 beta production. Predicted to act upstream of or within lipid transport. Predicted to be located in Golgi apparatus; bounding membrane of organelle; and plasma membrane. Predicted to be active in cytosol and membrane. Orthologous to human CPTP (ceramide-1-phosphate transfer protein).

GO:

id name namespace
GO:1900226 negative regulation of NLRP3 inflammasome complex assembly biological_process
GO:0120009 intermembrane lipid transfer biological_process
GO:0032691 negative regulation of interleukin-1 beta production biological_process
GO:0035627 ceramide transport biological_process
GO:0010507 negative regulation of autophagy biological_process
GO:0006869 lipid transport biological_process
GO:0005768 endosome cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0120013 lipid transfer activity molecular_function
GO:1902387 ceramide 1-phosphate binding molecular_function
GO:1902388 ceramide 1-phosphate transfer activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-240 Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in several processes, including lipid transport; negative regulation of NLRP3 inflammasome complex assembly; and negative regulation of interleukin-1 beta production. Predicted to act upstream of or within lipid transport. Predicted to be located in Golgi apparatus; bounding membrane of organelle; and plasma membrane. Predicted to be active in cytosol and membrane. Orthologous to human CPTP (ceramide-1-phosphate transfer protein).
ZDB-GENE-060825-319 Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in cilium. Orthologous to human UBXN10 (UBX domain protein 10).

Ensembl:

ensembl_id ENSDARG00000052535 ENSDARG00000052537

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043360 False 1508 mRNA 0.40 2 37086159 37090181
TCONS_00043361 False 497 processed_transcript 0.42 3 37086165 37093123
TCONS_00043362 True 1289 mRNA 0.39 2 37090889 37094205

Neighbor

gene id symbol gene type direction distance location
XLOC_021887 NA coding upstream 47750 37026350 ~ 37038409 (+)
XLOC_021886 CR926464.1 coding upstream 190790 36891729 ~ 36895369 (+)
XLOC_021885 NA coding upstream 240179 36842632 ~ 36845980 (+)
XLOC_021883 march9 coding upstream 287539 36771593 ~ 36798620 (+)
XLOC_021884 dre-mir-2191 coding upstream 295827 36790223 ~ 36790332 (+)
XLOC_021889 NA coding downstream 19082 37113287 ~ 37118114 (+)
XLOC_021890 vwa5b1 coding downstream 91042 37185247 ~ 37198890 (+)
XLOC_021891 NA coding downstream 132976 37227181 ~ 37433229 (+)
XLOC_021892 NA coding downstream 192209 37286414 ~ 37287626 (+)
XLOC_021893 fam43b coding downstream 229757 37323962 ~ 37325961 (+)
XLOC_021878 NA non-coding upstream 500408 36585179 ~ 36585751 (+)
XLOC_021894 AL954146.2 non-coding downstream 344629 37438834 ~ 37438950 (+)
XLOC_021899 AL954146.3 non-coding downstream 398530 37492735 ~ 37492851 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01757774_01758445 NA coding CI01000001 null 1757189 ~ 1759443 (-)