XLOC_021890 (vwa5b1)


Basic Information

Item Value
gene id XLOC_021890
gene name vwa5b1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37185247 ~ 37198890 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043363
CAAGCGGCGTCGCTACAGCATGATGCGCTCCAATGAGTCTGCCAGTTCAGTCTTCTACCACTCTCTGGAGGAGGATGCTGGGAAGGTTTCCTCTGACGCTCAGAGGCCGCACAGGGACAATCAGGTCGGCTCACTGTTTGACTGTTGCCAGGAGACCATGTCTGAAAGCAGCCCTATTGCCACGGAGCAAGACATTATAGGAACTGACTCGAGCACCTCTCCAAGAAGACGTGCTTATAGTACGAATCAGATTGTGGATTACAACCCCACGAAGAAGACTTACACTCCCAGTGACCCCAGCTCAGTGGTGGGCAGAAACCCTTTGAGAAGAGCCAAAGTCCAGGAGCTCATTGGACAGAGTCATCCTGACCACGGAGCTCAGTGGAAAATGGACTACCAGCCACAATTGGCAAGCCTGTGTGCCACATCCTCTAGAGGACGTCCCGTATCGGCTCACAAAACCCCAGTGCAGCAACAAGAGATTCTTCAGGGGGAGAGTAAGGGAGATCAGACCCACCCCGTTCCATCAGCACAGGGTCCCGTTGTGGAGAACGGCTCCAGGTCTTCAACAGACAGTCCATCTCTGGGCAGCACCGGTGACGCAGATGGCTACACGCATCAGCTTTGCGAAGTCGAAACACCACAAGATCCTCGTGCGCCAGAATTCAAGGCCAGTCACGGAAAGCGAGATTGTAAAGTGGTCGTGTCTGGACTTCTGTGTGGCAAACACATGAAGTGGGAAGTGACCTTTGACATTCA

Function

symbol description
vwa5b1 Orthologous to human VWA5B1 (von Willebrand factor A domain containing 5B1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-299 Orthologous to human VWA5B1 (von Willebrand factor A domain containing 5B1).

Ensembl:

ensembl_id ENSDARG00000059705

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043363 True 759 mRNA 0.53 4 37185247 37198890

Neighbor

gene id symbol gene type direction distance location
XLOC_021889 NA coding upstream 67133 37113287 ~ 37118114 (+)
XLOC_021888 cptp coding upstream 91042 37086159 ~ 37094205 (+)
XLOC_021887 NA coding upstream 146838 37026350 ~ 37038409 (+)
XLOC_021886 CR926464.1 coding upstream 289878 36891729 ~ 36895369 (+)
XLOC_021885 NA coding upstream 339267 36842632 ~ 36845980 (+)
XLOC_021891 NA coding downstream 28291 37227181 ~ 37433229 (+)
XLOC_021892 NA coding downstream 87524 37286414 ~ 37287626 (+)
XLOC_021893 fam43b coding downstream 125072 37323962 ~ 37325961 (+)
XLOC_021894 AL954146.2 coding downstream 239944 37438834 ~ 37438950 (+)
XLOC_021895 AL954146.1 coding downstream 246043 37444933 ~ 37453984 (+)
XLOC_021884 dre-mir-2191 non-coding upstream 394915 36790223 ~ 36790332 (+)
XLOC_021899 AL954146.3 non-coding downstream 293845 37492735 ~ 37492851 (+)
XLOC_021900 NA non-coding downstream 326000 37524890 ~ 37546006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01707363_01743870 VWA5B1 coding CI01000001 null 1707089 ~ 1743870 (-)