XLOC_021896 (cdaa)


Basic Information

Item Value
gene id XLOC_021896
gene name cdaa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37458602 ~ 37466323 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043370
acacattaacttgTGACTTGAAGCCGTGTAGTGCCTGGCAGCAGGAACAGAGTCTCCAGTCAGCGGCATTATGAGTAGCTGTAACCCACAAGTGCTTGTTCAGAGATCTCAGGAAGCCAGAAAGCTGGCGTATTGTCCTTACAGCAGGTTCAGGGTGGGAGCAGCTGTTTTAACAAGCGATGGAACTGTATTCACAGGTTGTAATGTAGAGAATGCATGTTACACCGCTGGATTGTGTGCTGAAAGGACTGCCATCTCAAAAGCTGTGTCAGAGGGACACACCACCTTCAAAGCCATCGCAATCGCCAGTGACCTTGAAGATCGCTTTATTTCTCCATGTGGAGCCTGCAGGCAATTCATGAGAGAGTTTGGCTCACAGTGGGACGTTTACTTGTCAAAAACTGATGGATCGTTCAAACAAATGACAGTGGAGGAGCTTCTGCCATGTTCATTTGGCCCAGATGACCTGAGAGCAAGAGAAAACCCTTAAAAtgttacaataatatttaatgaatgcataaactaataaataattaccATCTTCTGAAGTGTAGTCAGGTTAATAATtgacttaaaggtgctgtatgtaagtttttgactcttctgaagcataaaaataccatgtttgtttatatttaagaaatatgctaagtgaacattcttgtttatctgaaaaacaatgctgaagtcagatattctgcttgaaaatgtgcattacatgcCAGAACGCTGTcattgttttggttcttttatcCCGCCCACTGACGTATGACGTATCTTAGTCAATGATGCATCtcagtcattcagtcaggaagattCTCAAAGTGTACATCCATGAAGGAattgcgacctccggtggacaatagcagactccaaaatgagatgcagattcagagttccacatgagtttattatatagcaaataatataaattttacaGACGTAAACATTAGGTGTAGCAGGTTACATTGTGATTGCTTCCCAACAACACGCTGTGTGATGAGATACGCAGTAACACAGAtaagacagaaatttaaatgcagccattcagaagcacaaaatagtgcacttactgcactccagcgAAATGATAAggttaaaatctaattaaataataattaaatgtacacGCTAAATCActtatgtgttggtttgcactgagtcatagttataaagttcaatttcaaacagtttattttattttcaggatctgaggtgaactgccactgctgcttttagtagtaaAGCAATAAATATCTAGTATAAAGGCATTTAAaatcacattgttagcatttaacacagaATAAAGCTGATATAActattgtcagtttatcctgttgttcagctgcaagaaatagaagctttTATTTAGAGCATGGTTTGAATCAGCCTTCAGGCTCAACAGTTAGGCACACTTCTGTTGGTGTCGTGAAATCTGGCAACATGGGCTTGCGTGTGTTTAAAACAGGGACTAAAATGCTTAGTTCaaccactgagtgtcaaacttgaaagctgcacctttaatgtaatagttttttttattgaatatttatattaaaatatcagGTAAATTATCTCTGTAAATCGCTCAATTAACAATCACCATAAAAATTCAGGCTCTTAAAGaccttaaacaaaaaaaaaggaaactatttaatgttttaaagcgAATGTGcaaaatagatatttttattgtattgaacCTTTGAATTGTATACCATTATTCCACAATTAAAATATGTGTTGTCTAATAAGAATAATTTTAATCTGAAGAATTGGGGATTAACAATTGACTTAGCTGACTCAATAAATAATGCCATTATTTATTGAGCTTATATGGAATATAAACAATCTCGACTTTAATGTGAAATAGGTTTCTttcagcttttattttgaaggctTTCTCTTGAAATTTCTGGATTACCAATCAGGACAAACAAAAGAAACCCATTAAATATGAGTACATAAGCATATGAAGCAAATGTGTAGGAAAGTTAGATTtgaaatgatttaaatatttgatatttttgcatatattttactatttaaaaaggGAAATGGGTCATCTAAAAACAGTAATTTTATACTGAAATGTTGTGAGGTTAGTTAGACTTagtgtcattttctttttaaatcgaaaatgtattttaaacgtCACCTGTCTTGACTTTTATTGTGAAATACATTTCGTTAtgtcttttttaatgtattaataatcaACATGTATTGTGTCTCATAAAAGATGGCCACGTAATGAATGAAGTTTgtagaattaaaaaaatttaatgcacT
>TCONS_00044687
TTGATCTCTCTGCATCTGTCTTTTCCAGTTTGGCTCACAGTGGGACGTTTACTTGTCAAAAACTGATGGATCGTTCAAACAAATGACAGTGGAGGAGCTTCTGCCATGTTCATTTGGCCCAGATGACCTGAGAGCAAGAGAAAACCCTTAAAAtgttacaataatatttaatgaatgcataaactaataaataattaccATCTTCTGAAGTGTAGTCAGGTTAATAATtgacttaaaggtgctgtatgtaagtttttgactcttctgaagcataaaaataccatgtttgtttatatttaagaaatatgctaagtgaacattcttgtttatctgaaaaacaatgctgaagtcagatattctgcttgaaaatgtgcat

Function

symbol description
cdaa Predicted to enable cytidine deaminase activity and zinc ion binding activity. Predicted to be involved in cytidine deamination. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CDA (cytidine deaminase).

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-170609-2 Predicted to enable cytidine deaminase activity and zinc ion binding activity. Predicted to be involved in cytidine deamination. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CDA (cytidine deaminase).

Ensembl:

ensembl_id ENSDARG00000111188

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043370 False 2292 mRNA 0.34 4 37458602 37466323
TCONS_00044687 True 376 lncRNA 0.34 1 37464371 37464746

Neighbor

gene id symbol gene type direction distance location
XLOC_021895 AL954146.1 coding upstream 4618 37444933 ~ 37453984 (+)
XLOC_021894 AL954146.2 coding upstream 19652 37438834 ~ 37438950 (+)
XLOC_021891 NA coding upstream 25373 37227181 ~ 37433229 (+)
XLOC_021893 fam43b coding upstream 132641 37323962 ~ 37325961 (+)
XLOC_021892 NA coding upstream 170976 37286414 ~ 37287626 (+)
XLOC_021897 pink1 coding downstream 644 37466967 ~ 37480785 (+)
XLOC_021898 agmat coding downstream 16404 37482727 ~ 37490249 (+)
XLOC_021899 AL954146.3 coding downstream 26412 37492735 ~ 37492851 (+)
XLOC_021900 NA coding downstream 58567 37524890 ~ 37546006 (+)
XLOC_021901 plekhg5b coding downstream 112784 37579107 ~ 37720166 (+)
XLOC_021889 NA non-coding upstream 340488 37113287 ~ 37118114 (+)
XLOC_021887 NA non-coding upstream 420193 37026350 ~ 37038409 (+)
XLOC_021902 NA non-coding downstream 194355 37660678 ~ 37661442 (+)
XLOC_021903 NA non-coding downstream 256128 37722451 ~ 37724792 (+)
XLOC_021904 NA non-coding downstream 272380 37738703 ~ 37798412 (+)

Expression


Co-expression Network