XLOC_021903


Basic Information

Item Value
gene id XLOC_021903
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37722451 ~ 37724792 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044892
tgtttttcttgtcttgaaaattcttcttgagttaggaatttttagatatttggactagaaacaagacaaaaaatctaagtaagaaaattatatatatatattgaagaatgtagCAAACCATTGACAtctacaataagaaaaaaaacaaatcctgTGGAATTAAGTACTACAACattcttcgaaatatcttctttttgtgttcaacagaagaaatgatCTCAATTATGTTTGGATCAAATGgagggttgagtaaatgatgaactgtctctttaaggcatattaaacatttcatttggaccagtgttattttcattaacAGGATGGAGTCAATATTTCTGTATGAATATAGATGTTTTGCCACGGCTTTATTTAAAGAATCCCTTACTGTATATTACGTCTAAAGGATTCATAAATGACTTGTTTAACAGACTGTGTTTTTGGTTTGTAACCGATTGAGCACTTATGAGTGTTTGGTTTAAGTGGAAGCTTGAGGTAGTTTTCAGATGTTCCCGTTTATGTATTGATGATTTCTGCAGCTTATGATTTGATACTGCTGTTACCCGACATGTTGAGCTGAAACTGCCTGGTGCTTCGCTAAACTAAAACCAACTCCTTATCTGAAAGATACAACCCTAAAAGACGCTGCCCCCAATAAATATGGTGTATTACTGTATATGTTTACCTACTAGGCATTTTgtgtttgttatatttattgagcttgcaattgttttatatatataaaatatgctcTGTAATAGTTTCACTTTGGTTGCATTTTTCGGTTTAGTTTTGTCGTCTTTGTTAAATGTGTTTCGttgaaattaattttgaaatgtgcTAAGAACCAAAATAATAACAGCGGTTCCCCTGTGAGGGAGtgtctttcaaaataaaagacattcagtatttgtgcagttttttttgtcATGCATTGGAATGAACATGAGCATCGATTTGTAGAAAACACCCACTAAaatgtacactcaccagccactttattaggtacacctatctaaCTGCtcgttataatataatataaatgttaataatataataataaatataaaataatataatgcatttatGTATGATCACTAAAAACGTATATATACAGGTCAGAAATGGATGTTTG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0048732 gland development biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0072102 glomerulus morphogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048785 hatching gland development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0001889 liver development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0048389 intermediate mesoderm development biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044892 True 1132 lncRNA 0.31 2 37722451 37724792

Neighbor

gene id symbol gene type direction distance location
XLOC_021901 plekhg5b coding upstream 2285 37579107 ~ 37720166 (+)
XLOC_021902 NA coding upstream 61009 37660678 ~ 37661442 (+)
XLOC_021900 NA coding upstream 176445 37524890 ~ 37546006 (+)
XLOC_021899 AL954146.3 coding upstream 229600 37492735 ~ 37492851 (+)
XLOC_021898 agmat coding upstream 232202 37482727 ~ 37490249 (+)
XLOC_021904 NA coding downstream 13911 37738703 ~ 37798412 (+)
XLOC_021905 irx7 coding downstream 90853 37815645 ~ 37816969 (+)
XLOC_021906 NA coding downstream 117464 37842256 ~ 37926073 (+)
XLOC_021907 NA coding downstream 179678 37904470 ~ 37904696 (+)
XLOC_021908 cbln4 coding downstream 230249 37955041 ~ 37974323 (+)
XLOC_021894 AL954146.2 non-coding upstream 283501 37438834 ~ 37438950 (+)
XLOC_021891 NA non-coding upstream 289222 37227181 ~ 37433229 (+)
XLOC_021909 NA non-coding downstream 366534 38091326 ~ 38094560 (+)
XLOC_021912 CABZ01070579.1 non-coding downstream 541371 38266163 ~ 38296789 (+)

Expression


Co-expression Network