XLOC_021904


Basic Information

Item Value
gene id XLOC_021904
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37738703 ~ 37798412 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044689
GGTGGAGTGAACTTGTCCAGTCAGTGTTCACTTTTCTTCTTCAGTAATTAGCTTGGCTTCCAGCAAAGCCATGCTTCAGCATCTTTGAGAAGAACACAACATCACGACCTCAGTACATCTGTCGTAAAACTACAGCGCGTGTTTCAGCTCCCTGTCAGAGATGAGCGAGATCAGTGAAGCGTCCTTACTGGATTATATCCGCTCCTCAGGAGGAAAAGTCAAAAATTCTGATCTGTCCAAAACATATAAGCATTTCATAAACCATAGCGATTTGCAACTACGTGCCAAATACAGAGAAGAGTTCAAGCTCATCATTGATAGAATTGCAGTGGTGAAATCGGAGAATgGGGAGAAATATCTCATCCTCAAGAAGAAATACAGGCAAGAGCAAGTGTCTGGCACTAAAAAGGGAGGTGAATCAATCAAGCCGCTTCATCCAAACCCACAAAATGAGCTCCTGGTTTCCAACCCAATGCAGAACCGTAGCCAAGCAGCTAAGACCCCGCAGCCAGTGATGGTGGCCTGGTGCTCAGGACCCATGATTACAGTCACAGACGCACAAGAGCCCACGGATATTGATGATCAGACGGAGGGCGCCCTCTCACTGAAAGCTGAGCATCAGAGCGAGGAGATCTCATCATCAGACAGAGAAGAAGACCTCGACAAAGACTCGGGGTCAAAGAGTGAATCTGAGCAGGATGAGGAGTCTGGAGGCAGTTTGGGATCCACCTCTGTGGCTCTGGATCCTCTTGAGAAAGAGTGGATTTTCTCGGCAGCGAGTGGCAAACTGTGCCATCTCACTCAGCTTCTAAAACAAGACTCCTCCCTGGCCAATAAAAAGGACTTCACCTCAGTAAGTTTACAGCGTTACATTGGGCTGCAAAACATGGTAAAGAAGACATGACCACAGCGTTGGTAGAGGCAGGAGCAGACATCAATACGAAAGCAGTACGTTCAGACATCATTTACTCATAAATCACTGCATTTTGAGTCTGATACAGATGCATACAAGCTTGAACTCTAATGGATTgttttgt
>TCONS_00044893
ATGAGCGAGATCAGTGAAGCGTCCTTACTGGATTATATCCGCTCCTCAGGAGGAAAAGTCAAAAATTCTGATCTGTCCAAAACATATAAGCATTTCATAAACCATAGCGATTTGCAACTACGTGCCAAATACAGAGAAGAGTTCAAGCTCATCATTGATAGAATTGCAGTGGTGAAATCGGAGAATgGGGAGAAATATCTCATCCTCAAGAAGAAATACAGGCAAGAGCAAGTGTCTGGCACTAAAAAGGGAGGTGAATCAATCAAGCCGCTTCATCCAAACCCACAAAATGAGCTCCTGGTTTCCAACCCAATGCAGAACCGTAGCCAAGCAGCTAAGACCCCGCAGCCAGTGATGGTGGCCTGGTGCTCAGGACCCATGATTACAGTCACAGACGCACAAGAGCCCACGGATATTGATGATCAGACGGAGGGCGCCCTCTCACTGAAAGCTGAGCATCAGAGCGAGGAGATCTCATCATCAGACAGAGAAGAAGACCTCGACAAAGACTCGGGGTCAAAGAGTGAATCTGAGCAGGATGAGGAGTCTGGAGGCAGTTTGGGATCCACCTCTGTGGCTCTGGATCCTCTTGAGAAAGAGTGGATTTTCTCGGCAGCGAGTGGCAAACTGTGCCATCTCACTCAGCTTCTAAAACAAGACTCCTCCCTGGCCAATAAAAAG
>TCONS_00043375
ATGAGCGAGATCAGTGAAGCGTCCTTACTGGATTATATCCGCTCCTCAGGAGGAAAAGTCAAAAATTCTGATCTGTCCAAAACATATAAGCATTTCATAAACCATAGCGATTTGCAACTACGTGCCAAATACAGAGAAGAGTTCAAGCTCATCATTGATAGAATTGCAGTGGTGAAATCGGAGAATgGGGAGAAATATCTCATCCTCAAGAAGAAATACAGGCAAGAGCAAGTGTCTGGCACTAAAAAGGGAGGTGAATCAATCAAGCCGCTTCATCCAAACCCACAAAATGAGCTCCTGGTTTCCAACCCAATGCAGAACCGTAGCCAAGCAGCTAAGACCCCGCAGCCAGTGATGGTGGCCTGGTGCTCAGGACCCATGATTACAGTCACAGACGCACAAGAGCCCACGGATATTGATGATCTGGATCCTCTTGAGAAAGAGTGGATTTTCTCGGCAGCGAGTGGCAAACTGTGCCATCTCACTCAGCTTCTAAAACAAGACTCCTCCCTGGCCAATAAAAAGGTGCGAAGAACAGCGTTACATTGGGCTGCAAAACATGGTAAAGAAGACATGACCACAGCGTTGGTAGAGGCAGGAGCAGACATCAATACGAAAGCAGGATACACACCTTTACACATCGCAGCGCTACATGGACATCGGCATATAGTGGACCTGCTGGTCAGGACATATGGAGCGAAGGAGAACCTGCGGGACTACAGTGGCCGCTTACCATATTATTACCTCAATTTACGGGACACACACTCAGAAGAGCACGACCTCTGTGAGTTAAACTCAACTCTTGTTTTTCTGCCCGGCGAGCGCAGGAACAGGAAGATCAGCTCTTTATTTCAGTCCATGAAGAGGTGGGGTTCGGCGGAGGAGCTGGCGCCCGTCCCGGAGGAGAGAACTGTCCCGCATCAACTCATGCTGCCTGCTTTCAGACCTCGAAAGTTTTCACGGTAG
>TCONS_00043376
GCCAAATACAGAGAAGAGTTCAAGCTCATCATTGATAGAATTGCAGTGGTGAAATCGGAGAATgGGGAGAAATATCTCATCCTCAAGAAGAAATACAGGCAAGAGCAAGTGTCTGGCACTAAAAAGGGAGGTGAATCAATCAAGCCGCTTCATCCAAACCCACAAAATGAGCTCCTGGTTTCCAACCCAATGCAGAACCGTAGCCAAGCAGCTAAGACCCCGCAGCCAGTGATGGTGGCCTGGTGCTCAGGACCCATGATTACAGTCACAGACGCACAAGAGCCCACGGATATTGATGATCAGACGGAGGGCGCCCTCTCACTGAAAGCTGAGCATCAGAGCGAGGAGATCTCATCATCAGACAGAGAAGAAGACCTCGACAAAGACTCGGGGTCAAAGAGTGAATCTGAGCAGGATGAGGAGTCTGGAGGCAGTTTGGGATCCACCTCTGTGGCTGTG

Function

GO:

id name namespace
GO:0033596 TSC1-TSC2 complex cellular_component
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000088187

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044689 False 1037 lncRNA 0.46 8 37738703 37789422
TCONS_00044893 False 681 lncRNA 0.48 6 37738863 37769603
TCONS_00043375 False 966 processed_transcript 0.49 8 37738863 37798412
TCONS_00043376 True 459 processed_transcript 0.50 4 37750334 37768156

Neighbor

gene id symbol gene type direction distance location
XLOC_021903 NA coding upstream 13911 37722451 ~ 37724792 (+)
XLOC_021901 plekhg5b coding upstream 18537 37579107 ~ 37720166 (+)
XLOC_021902 NA coding upstream 77261 37660678 ~ 37661442 (+)
XLOC_021900 NA coding upstream 192697 37524890 ~ 37546006 (+)
XLOC_021899 AL954146.3 coding upstream 245852 37492735 ~ 37492851 (+)
XLOC_021905 irx7 coding downstream 17233 37815645 ~ 37816969 (+)
XLOC_021906 NA coding downstream 43844 37842256 ~ 37926073 (+)
XLOC_021907 NA coding downstream 106058 37904470 ~ 37904696 (+)
XLOC_021908 cbln4 coding downstream 156629 37955041 ~ 37974323 (+)
XLOC_021909 NA coding downstream 292914 38091326 ~ 38094560 (+)
XLOC_021894 AL954146.2 non-coding upstream 299753 37438834 ~ 37438950 (+)
XLOC_021912 CABZ01070579.1 non-coding downstream 467751 38266163 ~ 38296789 (+)
XLOC_021913 FO904868.1 non-coding downstream 537348 38335760 ~ 38335884 (+)

Expression


Co-expression Network