XLOC_021906


Basic Information

Item Value
gene id XLOC_021906
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37842256 ~ 37926073 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044894
ATGATCGGACAAATGGATCACAGAAAACAGCATGTCCCTCAGCTCAGCAATGCAATGCAGCTGAATATAATGAACTTGGTAAAGTCTGGGAAAATGAGTATTGATGAAGCTCTGAATCAGGCGAGAAGCGGCAAAATGCACAAACAGAAGAACTTTGAGATCGAGGAAAAAGAGCCGTCGCAGTATAACTTCAGTGTCCGCAAGTTCAACCGCTATTTATGGCAGAAACGAGTTTTGCAGATTGATTTCAGCACAAGACTGTTGTGCAGCATCGAGAAAGGCATCGTCAAGCGGCAGCTCCTTTTTTCGGACGTGAAAAATTGCCATGATGCTCCAGGTACCAGGTTCTCCATTTCCTTCAGAGGGCGACCTGACTATGAGCTGGAAGCTGCGTCTTTGGAGGACAAGCAGAAGATCACGCAGCTGGTGAATCAGATCATCTACAATAACATATACAGCCCACCTGAGAATGGCACGCTGGATGTAGAAACCTCAAACTTACCTCCAGACAACCTTAAAGAGGGTCACCTTTTACTGCAGAGGGGAGGACTGGCGTCGTTCAAATGGAAGAAATACGAAGCTCATCTGCAGACGGGTCAGCTGACCCTGTATCCCATCGCTCATCAACCTGCCAGCAGTAATGCAGACACCTCCAGCGAGTACATTTGGCAGATCTCAGACATTTATGACAGTGTGGAGGGCGTCAGGTGTGCTGGGGGCGACGGGACGGCTCTTATCATCCATCTCTCGGATGGTATGGTCAGGGTGGACACCCCCTGCACCATTGACACCTTCATGCTGCGCAACGACAAGAATGATTTCCTGTTTCGGATCCCGAAAAGCGAGCACATGACCACCCCAGAGGCCTTAATGAATGAGCGAGATTCCTGGATGAAAGCCATCAGAGAACTGTGTGTGGACTGGAAACGAAAATCACAATTTGAAGACTTCTACGAAGCCCCTGACAGTGACTTTATCAATGTAACCGAGCCAGAAAGTAAGACTCAGAACAACCATGAGCCTCCACCGGTGCCGCCTTCACAGAGACCACGATTACCCAGAACACCCACAGCTGTGCACCCAGCCCTACCAACAACACCAGAGCCGCTGGAACCACTGGAGGCACCAAAACCACCTCGAAAGCCAAACCGCTCCACATTCTGCAGATCTGTAGCACTGCCCTTAACACCACCGGCGGCTGCATGTTCAACATCGCCTCCCACTTTGCCAATTTTGTTGCCTCCGGCATCACCTGTAGCATCAGGAGCAGTGCTAGGGCCTGCATCGCCTGTACCGTCTGCCCCGCCTGCCCCGCCTGCCCCCCCTGCTCCTTTGCCCCCTCCACTGCCCATCAAATCCAATCAGCTTTCAGAGAGGACAAAGGCTTTTCACTGGGACCTGGTGGCTCAGGATAAGATTGAGAAGTCAATGTGGTCCCGCAGAAGCCTCAGGAAGATTGAAATTGACACCTTGCGCCTGTTCGAGCTGTTTGGAGTAAAAGAGACGGTCAACAGTGGCAGCTTGGAGTCCAACAGTACTATAGAAATCATGCTGAATTCAAAGATCGCCCACAATTTCAATATTTTCCTGAAAAGTTTCCCCGTGCAACCAAAAGAGCTGAAGGACAAACTGTTGATTATAAATGAAGAGGAAGGCGGTCTCTCTGATGAACACATCACCTCTCTCAGGAGATACGTGCCCACTCCGGATGACGTGGAGATGTATAAATCACATAAAGGAGACTCAGCTGAGCTGCACGTGGTGGATCAGTACATGATGGAGATGTGCAACATCCCGAACCTCAGCGCTCACCTGGACCTGCTGCTCACCATGCGAGAGCTGCCCATCAGCATGGAGGACCTGGCGCCGCTGATTATCCAGAAGATCCACATGTGCCAGCAGCTGTGGGCTTGCGAGTCATTTGTCAGCGTGCTGGAGTACCTGCTGGCTGTGGGCAATTACCTCAACCAGAACGCAGGCAAGGACAGGGCCAAGGGATTTCGCCTCTCATCCTTAACTAAGATTTCTCAGCTACGCGGCAACAACCGTAAGTTCACCTTGCTGCATGCCCTTGTGGAGCAGATCATGTTGCGAGACCCACGTTTGGCCACCTTTTTCCTGGAGCTTGCAGAATTCGAGACAGTTCCCGGTGCTTCGGTTAAAGGTCTGACAGCGGAGGTGGACGTTGTGAGGAATGAATTTCAGAAGGTCATCCAGTACAGGAAGGCACATAAACGGAAAAACATGGGCAATCAGCAAATCAAGTTCTTCCAGGACATGAAGACGGCCATCCAGAAACATGAGGCCGACCTCCGACAGCTGATGAAGAGGTGCGAGGAGATGAGGAAGCTCTACACTGACATATTGGTCAAATTCGGAGAGCCTTTGGATCAAGACTCCCAAGAACTTTTCGGATGGATCTGCCAATTTATCAACGACTTCAAGAAAGTACACTCTGAATACACTCAATGA
>TCONS_00044690
GGTACCAGGTTCTCCATTTCCTTCAGAGGGCGACCTGACTATGAGCTGGAAGCTGCGTCTTTGGAGGACAAGCAGAAGATCACGCAGCTGGTGAATCAGATCATCTACAATAACATATACAGCCCACCTGAGAATGGCACGCTGGATGTAGAAACCTCAAACTTACCTCCAGACAACCTTAAAGAGGGTCACCTTTTACTGCAGAGGGGAGGACTGGCGTCGTTCAAATGGAAGAAGTATGAGAATATGTTTTACTATGCCTGTCTAGTTCTTCTCAAACCAGAAGtaaAGAAAGAACTTGGATTAATATTCGACTCTaaCCATCTCTCGGATGGTATGGTCAGGGTGGACACCCCCTGCACCATTGACACCTTCATGCTGCGCAACGACAAGAATGATTTCCTtattttttgtctcgttttacctTACAAACATTTCAACATTCTTGAGTTCTTAATGAATGAGCGAGATTCCTGGATGAAAGCCATCAGAGAACTGTGTGTGGACTGGAAACGAAAATCACAATTTGAAGACTTCTACGAAGCCCCTGACAGTGACTTTATCAATGTAACCGAGCCAGAAAGTAAGACTCAGAACAACCATGAGCCTCCACCGGTGCCGCCTTCACAGAGACCACGATTACCCAGAACACCCACAGCTGTGCACCCAGCCCTACCAACAACACCAGAGCCGCTGGAACCACTGGAGGCACCAAAACCACCTCCATCAGGAGCAGTGCTAGGGCCTGCATCGCCTGTACCGTCTGCCCCGCCTGCCCCGCCTGCCCCCCCTGCTCCTTTGCCCCCTCCACTGCCCATCAAATCCAATCAGCTTTCAGAGAGGACAAAGGCTTTTCACTGGGACCTGGTGGCTCAGGATAAGATTGAGAAGTCAATGTGGTCCCGCAGAAGCCTCAGGAAGATTGAAATTGACACCTTGCGCCTGTTCGAGCTGTTTGGAGTAAAAGAGACGGTCAACAGTGGCAGCTTGGAGTCCAACAGTACTATAGAAATCATGCTGAATTCAAAGATCGCCCACAATTTCAATATTTTCCTGAAAAGTTTCCCCGTGCAACCAAAAGAGCTGAAGGACAAACTGTTGATTATAAATGAAGAGGAAGGCGGTCTCTCTGATGAACACATCACCTCTCTCAGGAGTAAATACGTCACATCCATA
>TCONS_00043378
ATGACAGTGTGGAGGGCGTCAGGTGTGCTGGGGGCGACGGGACGGCTCTTATCATCCATCTCTCGGATGGTATGGTCAGGGTGGACACCCCCTGCACCATTGACACCTTCATGCTGCGCAACGACAAGAATGATTTCCTGTTTCGGATCCCGAAAAGCGAGCACATGACCACCCCAGAGGCCTTAATGAATGAGCGAGATTCCTGGATGAAAGCCATCAGAGAACTGTGTGTGGACTGGAAACGAAAATCACAATTTGAAGACTTCTACGAAGCCCCTGACAGTGACTTTATCAATGTAACCGAGCCAGAAAGTAAGACTCAGAACAACCATGAGCCTCCACCGGTGCCGCCTTCACAGAGACCACGATTACCCAGAACACCCACAGCTGTGCACCCAGCCCTACCAACAACACCAGAGCCGCTGGAACCACTGGAGGCACCAAAACCACCTCGAAAGCCAAACCGCTCCACATTCTGCAGATCTGTAGCACTGCCCTTAACACCACCGGCGGCTGCATGT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007507 heart development biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005515 protein binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000091015

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044894 False 2472 lncRNA 0.50 17 37842256 37926073
TCONS_00044690 False 1176 lncRNA 0.48 10 37849696 37877969
TCONS_00043378 True 521 processed_transcript 0.54 2 37851830 37854622

Neighbor

gene id symbol gene type direction distance location
XLOC_021905 irx7 coding upstream 25287 37815645 ~ 37816969 (+)
XLOC_021904 NA coding upstream 43844 37738703 ~ 37798412 (+)
XLOC_021903 NA coding upstream 117464 37722451 ~ 37724792 (+)
XLOC_021901 plekhg5b coding upstream 122090 37579107 ~ 37720166 (+)
XLOC_021902 NA coding upstream 180814 37660678 ~ 37661442 (+)
XLOC_021908 cbln4 coding downstream 28968 37955041 ~ 37974323 (+)
XLOC_021909 NA coding downstream 165253 38091326 ~ 38094560 (+)
XLOC_021910 zgc:112994 coding downstream 233642 38159715 ~ 38182757 (+)
XLOC_021911 znf217 coding downstream 319537 38245610 ~ 38263780 (+)
XLOC_021912 CABZ01070579.1 coding downstream 340090 38266163 ~ 38296789 (+)
XLOC_021900 NA non-coding upstream 296250 37524890 ~ 37546006 (+)
XLOC_021899 AL954146.3 non-coding upstream 349405 37492735 ~ 37492851 (+)
XLOC_021913 FO904868.1 non-coding downstream 409687 38335760 ~ 38335884 (+)
XLOC_021914 NA non-coding downstream 611495 38537568 ~ 38555295 (+)
XLOC_021918 CABZ01054023.1 non-coding downstream 1257173 39183246 ~ 39184309 (+)

Expression


Co-expression Network