XLOC_021909


Basic Information

Item Value
gene id XLOC_021909
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38091326 ~ 38094560 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044895
aaggttcactgcggttttccacaaggtaagtaaaaagtaaacaaataaagacgatttgttgataaagcatgtactgtaaactagtgacgttatctaattacatcaagtttatttattaaaaacacattttctcacatataacgttggtcatgcattagaacaatatatacattttaagataaggaacagtaaccagattgttgttttccacaatacaattcgtgcaaaatctatatataatatacaatatgcaactctaataatacaaatgtattcgtaattgtttcaatattaaagaacatcaagtgttttcaaaggtttattgtaaaaacaattattttgggaaaaaggcagaaattttgccagtctgagcacattttattcattgtacaacacaaaactaaacaaaaaaacagcttaatctaccacacacacacacatatatatatataggtgtaaattataaggtgttcactgttcagatatgaatattttttcattgctcttttcaggttctttagatttctttaaaaatccaatcttgttttctaataagcaaaaagtaaaatcactttacacatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttgtatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCACTCAGATTGATCATCAAGATCTCAATTATAAGCTTAAGTCTTGATGACAACTTGATGATCTGCAGGAAAAACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTCCATGTATATTAGATATCTACATTGTTTAGGCATATATGATTGTGTgagataaaatgtatttattctttcactactattgtaataacagaaagagacacattagttttactattactattgtttatgacaaacattaaaaaaactacagcatAAGCTCACAAAATATCGTGGCCTTGTTTAAACCTATTTGTTCTGGGTGTTGATAGTGGCCaaccatttttttctttatcagaaagtattttgttttgtctgattttatgaCACCTTATAGGCCATCAACTGTCCACATTGGGGTTTAGGAAATTAAAAGTCTGCTTATGCTGCTTGTCTACTAGTCTTAGGATAAGTtggaaatgttataaatgtaaattttttgtttttatctggtACAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGGGAGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCATTGCTTCCATTAGTCCCTGTATCTGTAGACCTAGGTGACAGTGGACTAGAgtcaaattttggttttatttaaactaaggcatactgatggcctttttactcatatttggtcatgcaagtattaatatatcctaaaatatttttatattctttttattggtggaaaagatgttggtataattatttttaatggactGCTAAGATCTCAGCAGACATTTTTTCTGAGATATTCTTTAATGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCCCTTCATCTGTCCTGCTTCCACACTAAATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACAaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACTTAGTAAAATTAGATTAGAAGATATAAACTTGTTCTGTACTGTTTCATTCCTTTTTTAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGGATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAACCCCATGATTTTAGTGTGTTACATGCCTAAGCACATGAGTTTAAATCTGAGATAGATGAACTGTGTGATTATCTTAAACTGATCTACAAGTAAATGCCAAAACTTATtggtttacttatttgtttgtttgtttttgtttttttttgtatatgttaaCCAGGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGGTAACGATATCCAGTAGAATTTGTTTTGGTTGTTCAGTAACCTATTTGAATAGTATTGTGATTTTTGATTGCTTATCATTGTAGACCGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGGAACTGGCAGTGACTGGAAACCAATTGGAAGACTGTGGTCTGTGATGTAGAGGAGTGGGCAGACGGTGAggaaattcttattaatattaaatgtagtcatgaaaaattgtaattgttactattattgtcattttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGATGTATAATCCTTGTTATACaactttctttttattaatatatttcagactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTTTTTCAAAGAACTTTCCTGCTAGTTTGCTACTGAAAAGTACtg
>TCONS_00043380
ttGTGTCTTTCAGCCTGTTTCTGCCTATCACCACTCAGATTGATCATCAAGATCTCAATTATAAGCTTAAGTCTTGATGACAACTTGATGATCTGCAGGAAAAACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGGGAGCCTTGCTCCAGTGACTGTCAGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGGAACTGGCAGTGACTGGAAACCAATTGGAAGACTGTGGTCTGTGATGTAGAGGAGTGGGCAGACGcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTTTTTCAAAGAACTTTCCTGCTAGTTTGCTACTGAAAAGTACtg
>TCONS_00043381
ttGTGTCTTTCAGCCTGTTTCTGCCTATCACCACTCAGATTGATCATCAAGATCTCAATTATAAGCTTAAGTCTTGATGACAACTTGATGATCTGCAGGAAAAACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGGAACTGGCAGTGACTGGAAACCAATTGGAAGACTGTGGTCTGTGATGTAGAGGAGTGGGCAGACGcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTTTTTCAAAGAACTTTCCTGCTAGTTTGCTACTGAAAAGTACtgATTCGACATGTGGCCTAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCtcaaaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttttaaataaagctccagctgatgagtatgacattgactggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatcatctataa
>TCONS_00043382
TCACCACTCAGATTGATCATCAAGATCTCAATTATAAGCTTAAGTCTTGATGACAACTTGATGATCTGCAGGAAAAACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGGGAGCCTTGCTCCAGTGACTGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGGAACTGGCAGTGACTGGAAACCAATTGGAAGACTGTGGTCTGTGATGTAGAGGAGTGGGCAGACGtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTTTTTCAAAGAACTTTCCTGCTAGTTTGCTACTGAAAAGTACtgATTCGACATGTGGCCTAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCtcaaaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttttaaataaagctccagctgatgagtatgacattgactggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatcatctataa
>TCONS_00043383
ACTCAGATTGATCATCAAGATCTCAATTATAAGCTTAAGTCTTGATGACAACTTGATGATCTGCAGGAAAAACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGGAACTGGCAGTGACTGGAAACCAATTGGAAGACTGTGGTCTGTGATGTAGAGGAGTGGGCAGACGcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTTTTTCAAAGAACTTTCCTGCTAGTTTGCTACTGAAAAGTACtg
>TCONS_00043384
ATCTTCCCAACTGTGAGGGAGCCTTGCTCCAGTGACTGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGGAACTGGCAGTGACTGGAAACCAATTGGAAGACTGTGGTCTGTGATGTAGAGGAGTGGGCAGACGGTGAggaaattcttattaatattaaatgtagtcatgaaaaattgtaattgttactattattgtcattttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTTTTTCAAAGAACTTTCCTGCTAGTTTGCTACTGAAAAGTACtgATTCGACATGTGGCCTAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCtcaaaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttttaaataaagctccagctgatgagtatgacattgactggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatcatctataa

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095280

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044895 False 2839 lncRNA 0.33 1 38091326 38094164
TCONS_00043380 False 729 lncRNA 0.44 6 38091978 38094164
TCONS_00043381 False 891 lncRNA 0.40 6 38091978 38094560
TCONS_00043382 False 919 processed_transcript 0.41 7 38092005 38094560
TCONS_00043383 False 641 processed_transcript 0.43 5 38092010 38094164
TCONS_00043384 True 939 lncRNA 0.39 5 38092553 38094560

Neighbor

gene id symbol gene type direction distance location
XLOC_021908 cbln4 coding upstream 117003 37955041 ~ 37974323 (+)
XLOC_021906 NA coding upstream 165253 37842256 ~ 37926073 (+)
XLOC_021907 NA coding upstream 186630 37904470 ~ 37904696 (+)
XLOC_021905 irx7 coding upstream 274357 37815645 ~ 37816969 (+)
XLOC_021904 NA coding upstream 292914 37738703 ~ 37798412 (+)
XLOC_021910 zgc:112994 coding downstream 65155 38159715 ~ 38182757 (+)
XLOC_021911 znf217 coding downstream 151050 38245610 ~ 38263780 (+)
XLOC_021912 CABZ01070579.1 coding downstream 171603 38266163 ~ 38296789 (+)
XLOC_021913 FO904868.1 coding downstream 241200 38335760 ~ 38335884 (+)
XLOC_021914 NA coding downstream 443008 38537568 ~ 38555295 (+)
XLOC_021903 NA non-coding upstream 366534 37722451 ~ 37724792 (+)
XLOC_021902 NA non-coding upstream 429884 37660678 ~ 37661442 (+)
XLOC_021918 CABZ01054023.1 non-coding downstream 1088686 39183246 ~ 39184309 (+)
XLOC_021926 NA non-coding downstream 1657928 39752488 ~ 39752964 (+)

Expression


Co-expression Network