XLOC_021910 (zgc:112994)


Basic Information

Item Value
gene id XLOC_021910
gene name zgc:112994
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38159715 ~ 38182757 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043385
ATACCACTCCTTTCTTCATGGTGGCTGCCATCTTGAACGGGAAGCGAGCTGCGTGCACGCGCCTGAACGGCGTCTGAATGGAGCACGTGGATGTTTGAGTGTTTGTTGCGTGTTTCGGTTGCTGCTTCGAAAATATGgtgaactatctctttcaTCTCCACAACGGGCATGTGACCAGAAGTCCAAAGTTCTTCTATGCCAGTGCAAATATTCAGTTGCCGACTTGAAGCAAACATGGGAAACGAACAATCAGCCCAGAAAAAACGACAAAagGCAAATCCTGAGAAAAAAGTCCACAATGGAGAACTGAACGGGCACGCTGTACCAACTCCAGATCAAACTGAACCTGTTGCTAAAAAAGAAGCCCCAGTAGAGCAAAAGAGTGAAGCTCCACCAGTGACTGTCAAAGAGGAACCAAAACCACCAGAAAAGGAGGAGGTTGACAACAGTAAAGCCAACAAACCTGCACACGTGGAAACAACACCTGAGAAAAAAATCACAGTCACAACAGAGCCAGAGCCTCCCAAAAAAGCCAGCCCTAAGTCTAGTGGAGATGAGGCACCCAACTTCTTTggtaaaatgttcaaaaagaagCCTGAACCAGTAAAGCCTGCATCAGAAAAGAATGACACAGTGGACGCACCAGTGACAGTGCTGGAGCTGAAAATCGATGCACAGCCTGACAAAGTCTTCATTAACACAGACCAAAAGGAGACGGAGTTAGTTGATGGCCTTCCTGCTCAACCCATAAGTTCAGACTCAACCAAAAAGTCATCAAGCATGCATAAAGCTGTGACCTACCTGGAGGTTGTACTAGATTTGCCTGCACAAGCTCCAGTTGTAGTTGCTGAAGAGCTACAAAATCAAGAACCAGTTGTACGAAAAGCCATAAATGTGGGACATCTGATGTCTGAAGAAGCAATGGTGAACGCTGACTTTCCAGGAGAGGAAGAACTGAAGACTTTGGATGCTGAAAAAGCTTTGATGGAGGACAAAGAGCTTATAAAAATAGTTGAGAGCATAATATCAGAAGAATTATCATCCGAGAATAAGCCAAATGATACCAAACATCTGACATCTGATGCAGATGTTTCCAAAGAGCCTCCAAAGATCTCGTCTCATTCTGAAGAACCAGTCAGTGCCATGAAAGATTTGAGATTTCCTCCACAACAACTTCTCCAGATTCCTCAAGAACAGCACTCCAGAAGCCATGTATATGATGAACGTCTGACGAACAatctcaaagttgctgcagaagAACCAATAACAGCATCATCTATTAAACAAGCAGAAGAAAAGCCAACTCCTGCTGCTTTTGAATTAGCATTAGCTGCCAATGCATCTGTAGCAGAAACCATAAGCCACATACATGAAGAACCAGATGATCTTCAGAAAAACAAGCTCAGGGTTGTCGCAGAAGAGCCATTAACATCATCTGTTGAACAAGCAATGGTTGCAGAAGAAGAAGACACTCCTGCTGCTGCTTTTGAATTAGCTTCAGCTGCTGGCAGAGCCACGGCTGTAGATGAAGAAAGTTGGGTGGTTATAGAAGAACAAGCTCAACGCTTTGGAGAACCTCAAAGTAAATGCAATTCTGTGGACTCTGCTCAACTGTTCTCCCAGCTGAGGTCTGTTTGCACTAAGGTTTTAGAGGATGCTTCGTGTAAACCGCTCAGTGTAGATGTGTATGCTGACGAAAGCAGTATTCACATCACCATTGGGGTTTGTCTGGAAGAGTTTGCTCGTAAGAAATAAGGTCAATTACGAGACTTCGATAATAACTCACTCAATGTGACTCAACTGATGCCTTTCCTCAAGATGATTGTCTTCGAGTTGTTGCTGAAAGTGATGTTGATGCTTGCTACCTCGAAAAATAACACAAACGTTTGTCAGCATGCTTGATTATTCTCTTTATATACTCTGgctaatagttttaaataactttttatttttattttttaataatgctgCACTTATTTTCTGAAAAGTAAGTCAGTAATAATGTGACATTGTTTTTATTCAgcgttttctattttaatatgtttaataatgtataattatagTTCAATTCCTGCGATCAAAGGCTTtgcccagttctgggttgcggctggaggagcatccgctttgtaaaacatatgccggaatagttggcggttcattacactgtggcaacccATGATGAACTAAGCCGATCAAATGCTTATTTTTCAATCTGATTACTCCAGTGTTCAGTGTTTTTCAGAAAGCATCCTGATGAGCTGATTTGCTGCTGTGTTATGATCAGTTATTATCGGCGCTCAGTCATTAATTGGGgttcttaatttgttttttaaatgttgatttttttttttacattttagttctCAGGATTGTTTGATAAATAAAAGGTTCATTTTAACAAGCAA
>TCONS_00043386
GGAGAGTACTTTAATACAGCTTGTGGAAACTGTACACAGACGCTATAATTGACGCTGGAAagTGCCAGTGCAAATATTCAGTTGCCGACTTGAAGCAAACATGGGAAACGAACAATCAGCCCAGAAAAAACGACAAAagGCAAATCCTGAGAAAAAAGTCCACAATGGAGAACTGAACGGGCACGCTGTACCAACTCCAGATCAAACTGAACCTGTTGCTAAAAAAGAAGCCCCAGTAGAGCAAAAGAGTGAAGCTCCACCAGTGACTGTCAAAGAGGAACCAAAACCACCAGAAAAGGAGGAGGTTGACAACAGTAAAGCCAACAAACCTGCACACGTGGAAACAACACCTGAGAAAAAAATCACAGTCACAACAGAGCCAGAGCCTCCCAAAAAAGCCAGCCCTAAGTCTAGTGGAGATGAGGCACCCAACTTCTTTggtaaaatgttcaaaaagaagCCTGAACCAGTAAAGCCTGCATCAGAAAAGAATGACACAGTGGACGCACCAGTGACAGTGCTGGAGCTGAAAATCGATGCACAGCCTGACAAAGTCTTCATTAACACAGACCAAAAGGAGACGGAGTTAGTTGATGGCCTTCCTGCTCAACCCATAAGTTCAGACTCAACCAAAAAGTCATCAAGCATGCATAAAGCTGTGACCTACCTGGAGGTTGTACTAGATTTGCCTGCACAAGCTCCAGTTGTAGTTGCTGAAGAGCTACAAAATCAAGAACCAGTTGTACGAAAAGCCATAAATGTGGGACATCTGATGTCTGAAGAAGCAATGGTGAACGCTGACTTTCCAGGAGAGGAAGAACTGAAGACTTTGGATGCTGAAAAAGCTTTGATGGAGGACAAAGAGCTTATAAAAATAGTTGAGAGCATAATATCAGAAGAATTATCATCCGAGAATAAGCCAAATGATACCAAACATCTGACATCTGATGCAGATGTTTCCAAAGAGCCTCCAAAGATCTCGTCTCATTCTGAAGAACCAGTCAGTGCCATGAAAGATTTGAGATTTCCTCCACAACAACTTCTCCAGATTCCTCAAGAACAGCACTCCAGAAGCCATGTATATGATGAACGTCTGACGAACAatct

Function

symbol description
zgc:112994 Is expressed in yolk syncytial layer.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-519 Is expressed in yolk syncytial layer.

Ensembl:

ensembl_id ENSDARG00000026296

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043385 False 2405 mRNA 0.41 6 38159715 38182757
TCONS_00043386 True 1107 mRNA 0.44 5 38171186 38181593

Neighbor

gene id symbol gene type direction distance location
XLOC_021909 NA coding upstream 65155 38091326 ~ 38094560 (+)
XLOC_021908 cbln4 coding upstream 185392 37955041 ~ 37974323 (+)
XLOC_021906 NA coding upstream 233642 37842256 ~ 37926073 (+)
XLOC_021907 NA coding upstream 255019 37904470 ~ 37904696 (+)
XLOC_021905 irx7 coding upstream 342746 37815645 ~ 37816969 (+)
XLOC_021911 znf217 coding downstream 62853 38245610 ~ 38263780 (+)
XLOC_021912 CABZ01070579.1 coding downstream 83406 38266163 ~ 38296789 (+)
XLOC_021913 FO904868.1 coding downstream 153003 38335760 ~ 38335884 (+)
XLOC_021914 NA coding downstream 354811 38537568 ~ 38555295 (+)
XLOC_021915 zfp64 coding downstream 624104 38806861 ~ 38819116 (+)
XLOC_021904 NA non-coding upstream 361303 37738703 ~ 37798412 (+)
XLOC_021903 NA non-coding upstream 434923 37722451 ~ 37724792 (+)
XLOC_021918 CABZ01054023.1 non-coding downstream 1000489 39183246 ~ 39184309 (+)
XLOC_021926 NA non-coding downstream 1569731 39752488 ~ 39752964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_01199556_01205086 NA coding CI01000001 null 1199498 ~ 1205086 (-)