XLOC_021912 (CABZ01070579.1)


Basic Information

Item Value
gene id XLOC_021912
gene name CABZ01070579.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 38266163 ~ 38296789 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043390
CTAAACACTTAGGCATATTTAAATTATAGTATTCCACGTGTAACCTACTATTACACTATTAGGCTATTCATTCGTGTTAAAATCAGAGCGCCAAATGAAAGctactgttttttgttttatttaagattatttttgttataatattttttgtgtaTTAGCATATAGCAATCACACACAACACATATGAATGCAGTTTCTTTACCCTCTATGCTTCTGGACGATGAACATGGTGGTTTTGctactatatttatatttaactgaTTTAATAGTTATACTCAGTTGATCACTAAATGATAAATAGACAATAATTTCTACACGTTTTAAATGATCTGACCAATGGCTAAAAATCTAGCATGTGGAAGCTAAAATGTGATTAGCCTGTCCACACACTAGAGGGCGGTATAACCAAATACATAAACCGCTAACGTTGGAAACCACGTGCAGGTTGCTCGATTTAGCGGGACACAATAAACTCCTTACACAAAGACGTGTAAGGTTTTGCACAGATAAAATAACTCCCAGTTTTAAATGTACGATAACATTATGTACATTAAACAGTTTACTCCTGCATCTATGATTAAAGCCCCTAAGACTTTTAACTAGTCGACTGTACATCATAATAATGGCTAATTTGCTCTTTCTCGTCAGCATTTGTTTGCTGAATGATGGACGACGGTGTGTTGTTTAACCTGGCCACTGCATCACTTCATCTGCAGAAGAAAACAACCACACAGAAACTGCATATCCATCATCACATGACCTCTTCATGGCCAATGCTGTCGTCATTGATAATTGCCTGCTCCAGATTGTcaactagcatgaattagcaaccGCACGgTCTAGGAAGTTTTATATGTCTAGGAAGACATAGTTTTTCTGGGGATACAACAGCTTATTGGTATGTATAagactttttatatttatgtattgaacacatcaccatttttttcagaaaacattttaaaggtgcttttgacttgaaatgttcaccagatgttgataacaaccaaagaaacaaagaaacgtatatgaaaagaaaacaaaactaattaatttACAGATTAagatgtgtaataaaatgaaatgacgcagggaaaaagtattgtaagggaggtgtagaaaggcaatgaaagcccagacagcagctgaaatctctcggtAGTTCGTCAGCAACCCTCTACCCTTCCTCATTGTACATGGTGGGCCATTCATATGGATACACCTCAATAAAATGGGAATGGAATGGTGGTGATACTAACATCCCTGTTGGTGGCACATTAGTATaagtgagggggcaaacttttcaagatggctggtgaccatggtggccatttttaTGTCGTAACTTTAtcctttcatgagttatttacaagtttctgaccacttataaaatgtgttcaatgtgctgcccattgtgttggatttcTGAAGCACATGATCATCAGGTTTTACACATGAGTTCTTGCACCTTGAGTGCTGCTGTCAGTAAGAACGGGCATTCAAAACGTTATGAGACGTTAAAAAATGTTTGCAGTTAtgtgaagtaacaaattacaaatatttaaattactgtcattgagaagtttttctcaggaattgtacttaactagtttaaaaaatgtgcacctttactttcacttgagtacatttttagtgctgtatcagtacttttactccactgttttccttcaacctgtaggcactactttattatttttcttttctgtgGTGATTGGCTAGTATAGAAGAAGTACTAAACAGTTCTGTAATTGCCGTCCAATCAAATCGAACAAAGTAAATTGCATTATACAGAACAACTTCATGACAAAATTGTTGCACGCAATGaccgagagactgtttagactgcatgcCACTGATGAGAAAATGGCGAATGTCTAATGCACTATAGAAATggactacagaatattacgttttcacacacacatgcacaaatcgATGCATCAACCAACAATAGCGTAACACCTGATTTATGCTTTCACCTGGTACCGTGTTGCAGACCTCC
>TCONS_00044896
ttttgttataatattttttgtgtaTTAGCATATAGCAATCACACACAACACATATGAATGCAGTTTCTTTACCCTCTATGCTTCTGGACGATGAACATGGTGGTTTTGctactatatttatatttaactgaTTTAATAGTTATACTCAGTTGATCACTAAATGATAAATAGACAATAATTTCTACACGTTTTAAATGATCTGACCAATGGCTAAAAATCTAGCATGTGGAAGCTAAAATGTGATTAGCCTGTCCACACACTAGAGGGCGGTATAACCAAATACATAAACCGCTAACGTTGGAAACCACGTGCAGGTTGCTCGATTTAGCGGGACACAATAAACTCCTTACACAAAGACGTGTAAGGTTTTGCACAGATAAAATAACTCCCAGTTTTAAATCATTTGTTTGCTGAATGATGGACGACGGTGTGTTGTTTAACCTGGCCACTGCATCACTTCATCTGCAGAAGAAAACAACCACACAGAAACTGCATATCCATCATCACATGACCTCTTCATGGCCAATGCTGTCGTCATTGATAATTGCCTGCTCCAGATTGTcaactagcatgaattagcaaccGCACGGTGAGTCTGGAGgactcttgttttttttgttgtttgagttTGTATTTTTTGGAGAGATGTTGTCTGTGATTGCTCATCATTGTTGCCGGATCCCTCTGAGAAGGAAGGGAGATATAATGCGGGTAAAACCAGCCGCTGGCCTCAGGAAAGGGATTTGGGTGTCTGGAGACGAGCAGGACCATATGGAGCGGGGCTGAGATAGCAAGGCACACGTTCAGAATAATGGATGATGTGTCATGTTTCATGTTGCTAAGAAGCCATCAAGAGACCTGGTTGAGGGAAATCAAAAGACGTCCGTACAGTAAAAGTGACGCTTGCGCCGTTTAAAGATTTCAGTCCTTCCATCAAGCCACGTTGTTCTCTGTTGGCTGAAGCCATTAATGGGATGAGGGTTTTTTATGGAATGACATTGTTGTCATTGCTCTGTGAAAATGGGGCAGGAAACTGTTTGACACAGTTTTTTGATGGAACAAAGTgtgtttttataatgtcttacagAAGATCTCTAAGACTTTATTGtttggattgtaaaaaaaatacattttcatggcAAGAAAACAAAGGTTGtttatgtttacatgaacaccaataatccaattttaatacgattaagacagtactctgatagagtttaccatgtaaacagcaatttttgattaatatAAGGTCATAATTAATCTAAACTATTCAtattaaactattaccatcatgtaggataTTCACCGCATTTTGCGATTTTATTCACCGCATTTtagtctataccaggggtcaccaaacttgttcctggagggccagtgacctgcagattttagctctaactcaaatcaaacacacctgaacaagctaatcaaggtcttactaggtatacttgaaacatccagataggtgtgttgaggcaagttggagctaaaccctgcagggacaccggccttccaggaccgagattggtgacccctggtctatacaaacacgactgtttgacactattctctgcacctacccgAGTCAgcgaaggaccacagacacctgcgtcaagaaatgcggaggttttttttttgctcccatattagagctgtaatcgggccataaaagttaAGCCCGACAGAATTCAGCCAGAGCTCAACtaatacattttgattgacagctttttaaaaggcCGAGATCGTTTAC
>TCONS_00044692
atattttttgtgtaTTAGCATATAGCAATCACACACAACACATATGAATGCAGTTTCTTTACCCTCTATGCTTCTGGACGATGAACATGGTGGTTTTGctactatatttatatttaactgaTTTAATAGTTATACTCAGTTGATCACTAAATGATAAATAGACAATAATTTCTACACGTTTTAAATGATCTGACCAATGGCTAAAAATCTAGCATGTGGAAGCTAAAATGTGATTAGCCTGTCCACACACTAGAGGGCGGTATAACCAAATACATAAACCGCTAACGTTGGAAACCACGTGCAGGTTGCTCGATTTAGCGGGACACAATAAACTCCTTACACAAAGACGTGTAAGGTTTTGCACAGATAAAATAACTCCCAGTTTTAAATCATTTGTTTGCTGAATGATGGACGACGGTGTGTTGTTTAACCTGGCCACTGCATCACTTCATCTGCAGAAGAAAACAACCACACAGAAACTGCATATCCATCATCACATGACCTCTTCATGGCCAATGCTGTCGTCATTGATAATTGCCTGCTCCAGATTGTcaactagcatgaattagcaaccGCACGgTCTAGGAAGTTTTATATGTCTAGGAAGACATAGTTTTTCTGGGGATACAACAGCTTATTGGTATGTATAagactttttatatttatgtattgaacacatcaccatttttttcagaaaacattttaaaggtgcttttgacttgaaatgttcaccagatgttgataacaaccaaagaaacaaagaaacgtatatgaaaagaaaacaaaactaattaatttACAGATTAagatgtgtaataaaatgaaatgacgcagggaaaaagtattgtaagggaggtgtagaaagg
>TCONS_00044693
GCTCGATTTAGCGGGACACAATAAACTCCTTACACAAAGACGTGTAAGGTTTTGCACAGATAAAATAACTCCCAGTTTTAAATCATTTGTTTGCTGAATGATGGACGACGGTGTGTTGTTTAACCTGGCCACTGCATCACTTCATCTGCAGAAGAAAACAACCACACAGAAACTGCATATCCATCATCACATGACCTCTTCATGGCCAATGCTGTCGTCATTGATAATTGCCTGCTCCAGATTGTcaactagcatgaattagcaaccGCACGCATTCATGTCACAGGCCATTTCACTGTGACCGGGAGTATCTTACAGAGAAAATGCACCACGCACGAATATGTTCATCACAATAGCAGAGGGATACTCCACCAAAAGCCTTGTGCATTTTTGATGACTCGACCTTCTGTCCTCTTTCGGGGAGATGTAGTGCGTCATAAGGGGAGGTGAGCATTCGTTTCCTCCTGTATTTATACATTGCGCATTGAAAGAAAGTCATCGAGGCAGGATTGGACTGGCGTATATTTCCCCTGCGTCTCCCTTCAGCATGTCATTCTTTATCAGTAATCACCTTAGAGGGCAGCGTGGCACTCGTTTGTGAGATGCTGACCTCCCTTGCACTGAGAGGCAGTGGACAGTGGGGCTATCCATAACGCTGCCATGCATTACTAGCAGTAATATGTAGTGTAGTCGCCCCTTTTAGGCACTAGCATTTAAGTGCAAGGCCTGGGGAAAAACACCTCTTGG

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117759

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043390 False 2023 lncRNA 0.36 3 38266163 38295365
TCONS_00044896 False 1759 lncRNA 0.40 3 38266293 38283684
TCONS_00044692 False 866 lncRNA 0.36 4 38266303 38294466
TCONS_00044693 True 747 lncRNA 0.46 4 38266610 38296789

Neighbor

gene id symbol gene type direction distance location
XLOC_021911 znf217 coding upstream 2383 38245610 ~ 38263780 (+)
XLOC_021910 zgc:112994 coding upstream 83406 38159715 ~ 38182757 (+)
XLOC_021909 NA coding upstream 171603 38091326 ~ 38094560 (+)
XLOC_021908 cbln4 coding upstream 291840 37955041 ~ 37974323 (+)
XLOC_021906 NA coding upstream 340090 37842256 ~ 37926073 (+)
XLOC_021913 FO904868.1 coding downstream 38971 38335760 ~ 38335884 (+)
XLOC_021914 NA coding downstream 240779 38537568 ~ 38555295 (+)
XLOC_021915 zfp64 coding downstream 510072 38806861 ~ 38819116 (+)
XLOC_021916 sall4 coding downstream 643911 38940700 ~ 39063597 (+)
XLOC_021917 nfatc2a coding downstream 792785 39089574 ~ 39164866 (+)
XLOC_021907 NA non-coding upstream 361467 37904470 ~ 37904696 (+)
XLOC_021904 NA non-coding upstream 467751 37738703 ~ 37798412 (+)
XLOC_021903 NA non-coding upstream 541371 37722451 ~ 37724792 (+)
XLOC_021918 CABZ01054023.1 non-coding downstream 886457 39183246 ~ 39184309 (+)
XLOC_021926 NA non-coding downstream 1455699 39752488 ~ 39752964 (+)
XLOC_021932 CABZ01067001.1 non-coding downstream 2009455 40306244 ~ 40306371 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location