XLOC_021933 (elovl4b)


Basic Information

Item Value
gene id XLOC_021933
gene name elovl4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40410644 ~ 40438581 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043432
CGAGCGCACCGGCATGAGCCCCACATGGCGCGACTGCGCATGCTCAGTTGCGGACAGACCGGTGTCCAGTCACCGTCAGACGCACCGCTCAGAAGCGTTTGCCTCATATGCTCCGGTCCCGTTAGTTACACTCCGTTTGCCTTCGCGTTATTATTGCCAAAAAACTGCGGGGTTGATGCGTTTAAACGTACGCTGTAGATTTAAATATAGACAATTATTCACTCGCATATTTTACCTGGGCTGCAGCACACCTGATGTCGACATAGGCACGCGCTCGTAAGGATAATCATCTTAGAACTAGCGCCATGGAGACGGTCGTTCACCTGATGAATGACTCTGTAGAGTTTTACAAATGGAGCCTTACCATAGCAGACAAGCGTGTGGAGAAATGGCCGATGATGTCATCTCCTCTGCCCACTCTGGGGATCAGTGTTTTGTACCTGCTCTTCCTTTGGGCCGGCCCTCTTTACATGCAGAACCGCGAGCCTTTCCAGCTCAGGAAAACACTCATTGTGTACAACTTCAGCATGGTGCTGCTTAACTTCTACATCTGCAAAGAGCTGCTCCTGGGCTCCAGAGCAGCCGGATACAGCTACCTCTGCCAGCCTGTCAACTACTCCAATGATGTTAATGAAGTCAGGATAGCATCTGCTCTGTGGTGGTATTACATCTCCAAGGGAGTGGAGTTTCTGGACACGGTCTTCTTCATCATGAGGAAGAAGTTTAATCAGGTCAGCTTCCTGCACGTCTATCACCACTGCACAATGTTCATCCTGTGGTGGATCGGCATCAAGTGGGTTCCTGGTGGACAGTCTTTCTTTGGCGCAACGATTAACTCAGGCATTCATGTGCTGATGTACGGCTACTACGGCCTGGCAGCGTTTGGCCCGAAGATCCAGAAGTACCTGTGGTGGAAGAAATACCTCACTATTATTCAGATGaTCCAGTTCCACGTCACCATTGGCCATGCTGCTCACTCTCTCTACACGGGCTGTCCATTCCCAGCATGGATGCAGTGGGCTTTGATTGGCTACGCCGTTACATTCATCATCCTGTTCGCCAATTTTTACTACCAGACCTACCGTCGCCAGCCACGTCTCAAGACAGCCAAATCCGCAGTTAACGGCGTCTCCATGTCAACCAACGGCACCAGCAAGACAGCCGAGGTCACGGAAAATGGAAAGAAACAGAAGAAAGGAAAAGGAAAGCACGATTAAAACGAATCTTGGATGGAGATAAACCATTACAGACTGTTTGGTagttgtaaaaacaaaacaaacatgctGATTGTATTTCTGGGACAATAACCACATGCAACGTGATTTTCTAAGTCATCGAGCTGCTCGTGACAATCTTTATAATCTAAAATGTCCCTTATGGTATTCCAAATCATGAAAGCTAATTACTTGGCGATGTTTAGTTATCATCTTTGTTGGACTTTTCTACAGAATCATAGTTGCATATGCTTTTTTCCACAAACCTagcttcatttatttaatgttatatttattgaaagatTCCTACATTCAGTAAATGGCTCGTCTGGATGTTTTTCCACCTGTTTCAGCGGCAGTCAGAATTCTCGACACGTTTGGATCCTAACAAACGATGTTCGTTATTCGAGATACGAAACTATTTCGCTAATTCTGTTTTCTAATTTCgtttttgttaaaacaattattagtattattgtctgTTTGATCCTTCATTCGTAGCGAAACAGTAGTGTTTAAAAAGCCCTGGTTACTATTAGCACGAATAGGCAACTTTTAAAGTGGGAATCCAATTGTACCAAAGAAAGTCTAAAGAACATTTGGTGGCTTTATAGATCatgtttaatttcatttcttGTATCAAATGCATTGCTAAAATTGCATGCAGTAATGATGGTGTCACGGCTTCATACTCAGGTAGTTTCACAAACACACTTGTATATATGATTTACGAGGACTCTACATAGACGTAATGtactttatactgtaaaaactacATGTTATATGGCcttaccctacccctaaaccccaCCCTCACAGGAAAAGTGAGAAAATTaatgtttgaatgtcaaaaggcctcattaaatattaaatttaagcGCTTTGAATTATGGGGACAGTgtatgtccttgtaaaccagattaatagagtacaactaggtctTTCCGATGTCATTATACAACTTGTGTCCTCGTAATACACATAGacaagtacacacacacgcgTCCTAAATGTCTATCCGGGTATTGCTTTGTGTACATATATGTAGCTTTATATTGAGTTTTTGCAAAAGTCATATTGCATTACACTACACATATTGCATTATGAAGTTTCCTGTGATTATGAAATCGCAGGACAGGTGGTAGACCGCTCTAAAATCCTGTTTGAAAACTGCTGTATATTTTCTCTACGAGTACTGTTAAATTCACATGGGAAATACGCAGGATGTTCTCGTGATTTGCAACGTCAGTGTACctcttaataaacatttatatcaaCTGATACAGGACTGAATGAAATAAACAGGATGTCAACCTCAT

Function

symbol description
elovl4b Predicted to enable fatty acid elongase activity. Acts upstream of or within very long-chain fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in optic vesicle; pleuroperitoneal region; presumptive neural retina; solid lens vesicle; and visual system. Human ortholog(s) of this gene implicated in corneal dystrophy and spinocerebellar ataxia type 34. Orthologous to human ELOVL4 (ELOVL fatty acid elongase 4).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0006636 unsaturated fatty acid biosynthetic process biological_process
GO:0030148 sphingolipid biosynthetic process biological_process
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0035338 long-chain fatty-acyl-CoA biosynthetic process biological_process
GO:0019367 fatty acid elongation, saturated fatty acid biological_process
GO:0034625 fatty acid elongation, monounsaturated fatty acid biological_process
GO:0034626 fatty acid elongation, polyunsaturated fatty acid biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0102756 very-long-chain 3-ketoacyl-CoA synthase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0009922 fatty acid elongase activity molecular_function
GO:0102336 3-oxo-arachidoyl-CoA synthase activity molecular_function
GO:0102337 3-oxo-cerotoyl-CoA synthase activity molecular_function
GO:0102338 3-oxo-lignoceronyl-CoA synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7672 Predicted to enable fatty acid elongase activity. Acts upstream of or within very long-chain fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in optic vesicle; pleuroperitoneal region; presumptive neural retina; solid lens vesicle; and visual system. Human ortholog(s) of this gene implicated in corneal dystrophy and spinocerebellar ataxia type 34. Orthologous to human ELOVL4 (ELOVL fatty acid elongase 4).

Ensembl:

ensembl_id ENSDARG00000027495

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043432 True 2533 mRNA 0.43 7 40410644 40438581

Neighbor

gene id symbol gene type direction distance location
XLOC_021932 CABZ01067001.1 coding upstream 104273 40306244 ~ 40306371 (+)
XLOC_021931 tent5ab coding upstream 124585 40275400 ~ 40286059 (+)
XLOC_021930 gpsm2l coding upstream 224116 40133136 ~ 40186528 (+)
XLOC_021929 ghrhrl coding upstream 283785 40109353 ~ 40126859 (+)
XLOC_021928 fyco1a coding upstream 367432 39963599 ~ 40043212 (+)
XLOC_021934 soga3b coding downstream 13576 40452157 ~ 40466398 (+)
XLOC_021935 CR354556.1 coding downstream 27921 40466502 ~ 40472088 (+)
XLOC_021936 CR354556.3 coding downstream 38639 40477220 ~ 40480582 (+)
XLOC_021937 NA coding downstream 85813 40524394 ~ 40526983 (+)
XLOC_021938 cdh24a coding downstream 166370 40604951 ~ 40744851 (+)
XLOC_021926 NA non-coding upstream 657680 39752488 ~ 39752964 (+)
XLOC_021918 CABZ01054023.1 non-coding upstream 1226335 39183246 ~ 39184309 (+)
XLOC_021914 NA non-coding upstream 1855349 38537568 ~ 38555295 (+)
XLOC_021913 FO904868.1 non-coding upstream 2074760 38335760 ~ 38335884 (+)
XLOC_021939 CR405692.1 non-coding downstream 314123 40752704 ~ 40752818 (+)
XLOC_021940 NA non-coding downstream 376162 40814743 ~ 40815221 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G12848 NA misc CI01000001 null 129502 ~ 153337 (-)