XLOC_021934 (soga3b)


Basic Information

Item Value
gene id XLOC_021934
gene name soga3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40452157 ~ 40466398 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043433
TGgcactaaagtgttgttggaggTCTGTTATGATGACATGATGAGTTCTGCCGCAAGTGGCGCTGCGGATTTTCCACCATCATCAGCGGATGGTACCGAGGGGAGGAGGCGACCATCTCCCGGACAAACCTCCGCCAAACCGGCCTTAAACCCCCGCGGCAGCCGCTCCGCATCATCCACTGCGTCAAAGCCAGGAGCAAAATCCACTAAAGGACGTGAAGGAGAGCAGGACACGCGTGTGGTGAAGCTGAGGGGTGCGGCAGCTGTTCGTGGTGCTGAAACTGAGGCGATTTTGGAAACCGAGGAGCGGATTGACCGCGCTCCGCCACCGGACACCCGCCGCGCGCTGCGTTTTCCGTGCGTAAAAAGAGACTCGTCTGCGGAGAAACTCGACGGAGCGCCCGGTGGCGTGAGGGGGGGACAGGCCGCTGCGGGAGGAGAGTACGTGGGCTGCGGACCGGCCTTCTGGGGCGGAGGCTGTTTGCAGTCAGAGCTCATCCAATATCACATTAACAAGCGCTTGAGGAAAAGCGGTAGGATGCAGCGGCAGACACCGGGAGAGACGCAACCGGGATCGGGAGCGCAGGCCGAAGAGGTTATGACACAGCAGGATGAAGCCCTGCAGGAGGAGATCGAAAGGCTGGAGGACGAAAACGACGAGCTTAAGGTTTGAAAGCCATGCCGTTGCAAACTGTATAAAACGTCGTCATTGTGgggaaaa
>TCONS_00043434
ATGAGTTCTGCCGCAAGTGGCGCTGCGGATTTTCCACCATCATCAGCGGATGGTACCGAGGGGAGGAGGCGACCATCTCCCGGACAAACCTCCGCCAAACCGGCCTTAAACCCCCGCGGCAGCCGCTCCGCATCATCCACTGCGTCAAAGCCAGGAGCAAAATCCACTAAAGGACGTGAAGGAGAGCAGGACACGCGTGTGGTGAAGCTGAGGGGTGCGGCAGCTGTTCGTGGTGCTGAAACTGAGGCGATTTTGGAAACCGAGGAGCGGATTGACCGCGCTCCGCCACCGGACACCCGCCGCGCGCTGCGTTTTCCGTGCGTAAAAAGAGACTCGTCTGCGGAGAAACTCGACGGAGCGCCCGGTGGCGTGAGGGGGGGACAGGCCGCTGCGGGAGGAGAGTACGTGGGCTGCGGACCGGCCTTCTGGGGCGGAGGCTGTTTGCAGTCAGAGCTCATCCAATATCACATTAACAAGCGCTTGAGGAAAAGCGGTAGGATGCAGCGGCAGACACCGGGAGAGACGCAACCGGGATCGGGAGCGCAGGCCGAAGAGGTTATGACACAGCAGGATGAAGCCCTGCAGGAGGAGATCGAAAGGCTGGAGGACGAAAACGACGAGCTTAAGAGCACGATTGAAGAGATGCGGACGGAGATGGAGGAGATGCGCGACACCTTCTACGAGGAAGACACGTGTCAGCTAGATGAAATGCGGCGTGAGCTGGAAAGAGCGAATAAGAACTGTCGCATCCTTCAGTATCGACTCCGCAAAGCAGAGCGTAAACGACTACGCTATGCGCAGACCGGAGAAATCGACGAGGACCTCCTGAGGAGCTTAGAACAAGATTTAAAGGCAAATGTTTCTGTGAGACTCCACCATGAGCTGGAAAACGTGGAGGAGAAACGAACAAAGACTGAAGATGAAAACGAAAGGCTGAGACAGAAACTTATCGAGGTGGAAGTCACCAAACAGGCCCTGCAACTTGAGCTAGATAAGGCCAAAGAGaTATATGTCTGTTGTATCCAGTCTCAGAAACGAAGAGGAAGCAAAGATGCACAAAAGCCTGAGAGGAAGACCCAGACTCCTACAGAGGAGGACAGTGAGGACCTGAAATGCCAGCTGGCCTTCATTAAAGAGGAGGCTACCTTAATGAGAAAGAAAATGGCAAAAATCGACAAGGAAAAGGACCGCCTGGAGCAAGAACTTCAGAAGTATCGATCCTTCTATGGGGATTTGGATAGCCCTCATCCAAAGGGGGAAGCTGGTGGTCCACCCACTACAAGGGAATCAGAACTGAAACTCCGCTTGCGGCTGGTGGAAGAAGAGGCCAACATCCTTGGACGAAAAATTGTGGAACTGGAGGTCGAGAACCGTGGTCTGAGAGCAGAATTGGATGATCTTCGTGGGGATGAATCCTCTAATGGGGGCTTGTCCGGTGCGGAAGGAGGAATAGGGCGCGAACAGGGTTCAGAGCTGTCGGAGCTGAGGCAACAACTGCAGTTGGTGGAGGATGAGGCCGAACTTCTGAGGAGGAACCTCGCGGATGTAGAGGAACAGAATAAGAGAGTGACAAGTGAGCTGAATAAATTGCGCTTTAAAGAGGGTACAAGGCATGCTTCAGGTAGTAATGCAACAGGTTCCAATAATGGTGGAGGAGACAGCTCCAAATCTGAGGCCTTGCAGGAGGAGCTGAAGGCGGCAAGGAAGCAGATCAATGAACTGAGCGGGAAAGTGATGCAACTACAATATGAGAACCGTGTGCTGCTTTCTAACATGCAACGATATGACCTAGCATCTCATCTAGCCGTGACGCCACGTGACAGTGATGCAGAAAGTGATGGTGGTCCTGCAATCGGAGGACGTAGAGGAAGTGATGATGACTCTTCCTCATCTCGCCTCCCTCCCCATCGAAAACGCGAGGGTCCAGTTGGAGGAGAAAGTGACTCGGAGGAGGTCCGCAATGCTCGGTGCCTCACGccaactcgttcgctttattctCCTGAATCTGCCCGCCTCCTCTCACGCTCCATACGGGACAGGCAACAGATGATTGACATCCGTGCTGAGGCAGAGCGATTGGGACGGACCATTGACCGTCTTATAGCCGACACTAGTAACATCATCGCAGAGGCTCGGGTCTTTGTGGCTAACGGCGATCTTTTTGGTCGTATGGAAGATGAGGATGATGGTGGTCGGATCAGAGAGCATGAGCTACTCTTCCGCATCAACTCTCAAATGAAGACCTTCAGGAAGGAGCTCCAAGGGTTTATAGACCGGCTGGAAGTCCCAAAACCTGAGGAAAGAGATTCAGAAGAACCATTATCTATGTTTCAGCCCATCATTTTATTCATCCTCATCCTAGTGTTGTTCTCCTCGCTCTCTTATGCCACcatttttaaacttgtatttCTTTTTACCCTCTTTTTTGTCCTGTGA
>TCONS_00043435
ATGGAGGAGATGCGCGACACCTTCTACGAGGAAGACACGTGTCAGCTAGATGAAATGCGGCGTGAGCTGGAAAGAGCGAATAAGAACTGTCGCATCCTTCAGTATCGACTCCGCAAAGCAGAGCGTAAACGACTACGCTATGCGCAGACCGGAGAAATCGACGAGGACCTCCTGAGGAGCTTAGAACAAGATTTAAAGGTTGCCAAAGATGTTTCTGTGAGACTCCACCATGAGCTGGAAAACGTGGAGGAGAAACGAACAAAGACTGAAGATGAAAACGAAAGGCTGAGACAGAAACTTATCGAGGTGGAAGTCACCAAACAGGCCCTGCAACTTGAGCTAGATAAGGCCAAAGAGTCTCAGAAACGAAGAGGAAGCAAAGATGCACAAAAGCCTGAGAGGAAGACCCAGACTCCTACAGAGGTAAGAACAATGCAATAA
>TCONS_00043436
ATGAGAAAGAAAATGGCAAAAATCGACAAGGAAAAGGACCGCCTGGAGCAAGAACTTCAGAAGTATCGATCCTTCTATGGGGATTTGGATAGCCCTCATCCAAAGGGGGAAGCTGGTGGTCCACCCACTACAAGGGAATCAGAACTGAAACTCCGCTTGCGGCTGGTGGAAGAAGAGGCCAACATCCTTGGACGAAAAATTGTGGAACTGGAGGTCGAGAACCGTGGTCTGAGAGCAGAATTGGATGATCTTCGTGGGGATGAATCCTCTAATGGGGGCTTGTCCGGTGCGGAAGGAGGAATAGGGCGCGAACAGGGTTCAGAGCTGTCGGAGCTGAGGCAACAACTGCAGTTGGTGGAGGATGAGGCCGAACTTCTGAGGAGGAACCTCGCGGATGTAGAGGAACAGAATAAGAGAGTGACAAGTGAGCTGAATAAATTGCGCTTTAAAGAGGGTACAAGGCATGCTTCAGGTAGTAATGCAACAGGTTCCAATAATGGTGGAGGAGACAGCTCCAAATCTGAGGCCTTGCAGGAGGAGCTGAAGGCGGCAAGGAAGCAGATCAATGAACTGAGCGGGAAAGTGATGCAACTACAATATGAGAACCGTGTGCTGCTTTCTAACATGCAACGATATGACCTAGCATCTCATCTAGCCGTGACGCCACGTGACAGTGATGCAGAAAGTGATGGTGGTCCTGCAATCGGAGGACGTAGAGGAAGTGATGATGACTCTTCCTCATCTCGCCTCCCTCCCCATCGAAAACGCGAGGGTCCAGTTGGAGGAGAAAGTGACTCGGAGGAGGTCCGCAATGCTCGGTGCCTCACGccaactcgttcgctttattctCCTGAATCTGCCCGCCTCCTCTCACGCTCCATACGGGACAGGCAACAGATGATTGACATCCGTGCTGAGGCAGAGCGATTGGGACGGACCATTGACCGTCTTATAGCCGACACTAGTAACATCATCGCAGAGGCTCGGGTCTTTGTGGCTAACGGCGATCTTTTTGGTCGTATGGAAGATGAGGATGATGGTGGTCGGATCAGAGAGCATGAGCTACTCTTCCGCATCAACTCTCAAATGAAGACCTTCAGGAAGGAGCTCCAAGGGTTTATAGACCGGCTGGAAGTCCCAAAACCTGAGGAAAGAGATTCAGAAGAACCATTATCTATGTTTCAGCCCATCATTTTATTCATCCTCATCCTAGTGTTGTTCTCCTCGCTCTCTTATGCCACcatttttaaacttgtatttCTTTTTACCCTCTTTTTTGTCCTGTGA

Function

symbol description
soga3b Predicted to act upstream of or within regulation of autophagy. Predicted to be located in extracellular space and membrane. Predicted to be integral component of membrane. Orthologous to human SOGA3 (SOGA family member 3).

GO:

id name namespace
GO:0010506 regulation of autophagy biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-198 Predicted to act upstream of or within regulation of autophagy. Predicted to be located in extracellular space and membrane. Predicted to be integral component of membrane. Orthologous to human SOGA3 (SOGA family member 3).

Ensembl:

ensembl_id ENSDARG00000075455

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043433 False 721 mRNA 0.59 2 40452157 40452908
TCONS_00043434 False 2436 mRNA 0.53 6 40452197 40466398
TCONS_00043435 False 441 mRNA 0.48 3 40460333 40461053
TCONS_00043436 True 1287 mRNA 0.50 2 40461411 40466398

Neighbor

gene id symbol gene type direction distance location
XLOC_021933 elovl4b coding upstream 13576 40410644 ~ 40438581 (+)
XLOC_021932 CABZ01067001.1 coding upstream 145786 40306244 ~ 40306371 (+)
XLOC_021931 tent5ab coding upstream 166098 40275400 ~ 40286059 (+)
XLOC_021930 gpsm2l coding upstream 265629 40133136 ~ 40186528 (+)
XLOC_021929 ghrhrl coding upstream 325298 40109353 ~ 40126859 (+)
XLOC_021935 CR354556.1 coding downstream 104 40466502 ~ 40472088 (+)
XLOC_021936 CR354556.3 coding downstream 10822 40477220 ~ 40480582 (+)
XLOC_021937 NA coding downstream 57996 40524394 ~ 40526983 (+)
XLOC_021938 cdh24a coding downstream 138553 40604951 ~ 40744851 (+)
XLOC_021939 CR405692.1 coding downstream 286306 40752704 ~ 40752818 (+)
XLOC_021926 NA non-coding upstream 699193 39752488 ~ 39752964 (+)
XLOC_021918 CABZ01054023.1 non-coding upstream 1267848 39183246 ~ 39184309 (+)
XLOC_021914 NA non-coding upstream 1896862 38537568 ~ 38555295 (+)
XLOC_021913 FO904868.1 non-coding upstream 2116273 38335760 ~ 38335884 (+)
XLOC_021940 NA non-coding downstream 348345 40814743 ~ 40815221 (+)

Expression


Co-expression Network