Gene
RNA
| Item | Value |
|---|---|
| gene id | G268358 |
| gene name | pdk1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 49561352 ~ 49561761 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| pdk1 | Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PDK1 (pyruvate dehydrogenase kinase 1). |
| description |
|---|
| pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 1, mitochondrial-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU304910 | True | 327 | lncRNA | 0.46 | 2 | 49561352 | 49561761 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944672 | NA | coding | downstream | 58327 | 49494001 ~ 49503025 (-) |
| dlx2a | dlx2 | coding | downstream | 83235 | 49475978 ~ 49478117 (-) |
| LOC110520101 | LOC106586223 | coding | downstream | 148239 | 49390493 ~ 49413113 (-) |
| LOC110520100 | LOC106586220 | coding | downstream | 203904 | 49303033 ~ 49357448 (-) |
| ccdc173 | ccdc173 | coding | downstream | 486182 | 49055465 ~ 49075170 (-) |
| LOC110520112 | LOC106586230 | coding | upstream | 2080 | 49563841 ~ 49608114 (-) |
| sp3a | LOC106586237 | coding | upstream | 232896 | 49794657 ~ 49802027 (-) |
| LOC110520118 | LOC106586238 | coding | upstream | 253010 | 49814771 ~ 49862076 (-) |
| LOC110520119 | NA | coding | upstream | 305426 | 49867187 ~ 49871681 (-) |
| LOC110520120 | LOC106586242 | coding | upstream | 317349 | 49879110 ~ 49895110 (-) |
| G268351 | NA | non-coding | downstream | 2919 | 49558184 ~ 49558433 (-) |
| G268350 | NA | non-coding | downstream | 3823 | 49555919 ~ 49557529 (-) |
| G268346 | NA | non-coding | downstream | 11412 | 49549681 ~ 49549940 (-) |
| G268332 | NA | non-coding | downstream | 30888 | 49530231 ~ 49530464 (-) |
| G268330 | NA | non-coding | downstream | 33106 | 49527933 ~ 49528246 (-) |
| G268382 | NA | non-coding | upstream | 49069 | 49610830 ~ 49611085 (-) |
| G268428 | LOC106586235 | non-coding | upstream | 117246 | 49679007 ~ 49709073 (-) |
| G268458 | LOC106586235 | non-coding | upstream | 164393 | 49726154 ~ 49727656 (-) |
| G268459 | NA | non-coding | upstream | 165976 | 49727737 ~ 49728138 (-) |
| G268457 | NA | non-coding | upstream | 169188 | 49730949 ~ 49731347 (-) |
| G268310 | NA | other | downstream | 65549 | 49495477 ~ 49495803 (-) |
| LOC110505248 | gcg | other | downstream | 1528050 | 48032036 ~ 48033434 (-) |
| G265988 | NA | other | downstream | 1961537 | 47599218 ~ 47599815 (-) |
| G263274 | NA | other | downstream | 4023810 | 45536332 ~ 45537542 (-) |
| LOC110520121 | LOC106581751 | other | upstream | 338412 | 49895327 ~ 49901575 (-) |
| LOC110520139 | LOC106586251 | other | upstream | 878444 | 50440201 ~ 50442930 (-) |
| LOC110520160 | LOC106586095 | other | upstream | 1566679 | 51126600 ~ 51130404 (-) |
