G269649 (LOC106586249)


Basic Information

Item Value
gene id G269649
gene name LOC106586249
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50365876 ~ 50372026 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU306336
CCCGGGTGGCCGGCTGGCCCACCGATTGGAGGTCAGTAAATACCGGGCGATAACACCGGCATCATTTACCCTGGCCTATTGCCTTCCAGTATTAGCAATCTTCTAATTTTTAACCTTCCCCGCCTTCGAGAGAAATTGCGATTTAATATCACAGCTGATTCACTGCATGCTGTTTCTGACAGGCGTGATGAATAGCCTAAAGTGATGTATGAAACCGGCCAGGCGGATGGCAATATAGATAAGGTAGCCATTTGGGTTAGCCCTGATAGGGTACCAACAGAGCCGTTTTCCCCCCTCGCTCCCCTGCTCACGTTTCATTTGGCCCGTGTTGAACAAAAGAGCCACAGCAGACTGTCTGCACTGTGGGGAAGTTTGGACACCCCAAGGAAGCAATGAAAGGTCTCCTCCTAGCCAAAACAGAGGCTTTCAAAAGACTGTTCTGTGCCTGTTTTCTTACGTAGAGCAGCATACCGACAGAGCCTGTCAGACTACCCTAATGGGACTTCAAACCACTGCCCTGCCACTCATCTCTAAGTGAGGAGGCAGGGCAGTAGTATGAATGCTGTCGGGTTTTGGAGCCAAAAGGAACAGTGCCAAAACGTGCTGACATGGTTAGATGTAGGGATACTTCTAGATGTAGGGATGTTCACTTGACTGTACCTCCGTGGTGGTGCGAGAGGCTTCCTCCATTGGCTAGGATCTCCTCTCTAGCGGCGTGCTCCACTCGTTCATATGTATGTACTGGGTCCGCCAGTCCTCTGTAGTTGAAGGCAAAGTAGAAGTAAACACACGCGCCAGCGTCATAGGTCTGAGTCACTCTGCATGAGGTCAAGGGTTGAAACTGGACCCCTCGCTCTTTACACTCTCGGTTAATACGCTCTTTGACATTCCGGCAAAGGTCCAACACCCTGTCCCAAGGCACCGATGTCTCAAATGATTCTGCGACCACGTAGTAGTCCATCCCCAAGTCCTGTTAAATAAACCGCAAGACAAATGCTGAAGTAGAACATAATAGCACGGGGCTTGGATTTGAGAAGGAGACAACATATGATCAAATAAAATAACTATTATTGGAAGTCAAATAAAGGAGGCACACAATATAGCTTAGTGTTTCACACTTCGCGTGAGGAAACTAGCTTTTCACCGTCAATTGCTCATGTCCAGATTCCTCGAATGACAACATGACATCCCTGGCTGAACAGAGGCGCCAGATATCTCAGAGGTCACATTCTGCAGCCTTTGTGTGCATGTTCCTTCTATCCTATCAGCTGACAGAGGTCTCTATCTGCCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306336 True 1292 lncRNA 0.49 4 50365876 50372026

Neighbor

gene id symbol gene type direction distance location
nfe2l2a LOC106586247 coding downstream 32970 50325109 ~ 50332906 (-)
evx2 evx2a coding downstream 241256 50119669 ~ 50124620 (-)
lnpa LOC100194569 coding downstream 266179 50084100 ~ 50099697 (-)
LOC110520125 atp5g3 coding downstream 384006 49979196 ~ 49981870 (-)
atf2 atf2 coding downstream 386984 49962467 ~ 49978892 (-)
pde11a pde11a coding upstream 6374 50378400 ~ 50436074 (-)
LOC110520139 LOC106586251 coding upstream 68175 50440201 ~ 50442930 (-)
prkra LOC106586253 coding upstream 148239 50520265 ~ 50525331 (-)
LOC110520142 LOC106586254 coding upstream 162053 50534079 ~ 50542288 (-)
LOC110505276 NA coding upstream 170960 50542986 ~ 50543432 (-)
G269634 NA non-coding downstream 32445 50333218 ~ 50333431 (-)
G269603 NA non-coding downstream 42750 50322767 ~ 50323126 (-)
G269604 NA non-coding downstream 43324 50321491 ~ 50322552 (-)
G269632 NA non-coding downstream 45677 50318737 ~ 50320199 (-)
G269633 ro32 non-coding downstream 47272 50318073 ~ 50318604 (-)
G269663 NA non-coding upstream 16872 50388898 ~ 50389175 (-)
G269664 NA non-coding upstream 17170 50389196 ~ 50389424 (-)
G269665 NA non-coding upstream 17736 50389762 ~ 50389999 (-)
G269667 NA non-coding upstream 20224 50392250 ~ 50393020 (-)
LOC110520121 LOC106581751 other downstream 464338 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 494231 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 798402 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 862905 49494001 ~ 49503025 (-)
G268310 NA other downstream 870073 49495477 ~ 49495803 (-)
LOC110520160 LOC106586095 other upstream 756414 51126600 ~ 51130404 (-)
fgf9 NA other upstream 1101298 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 1225373 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 2336157 52693956 ~ 52708816 (-)

Expression


Co-expression Network