G269762


Basic Information

Item Value
gene id G269762
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50531271 ~ 50531890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU306458
atcatgggcattaatacagAGTTGGTTCcttctttgctgctataacagcctccactcttcttctgggaaggctttccactagatgttggaacattgctgtggagacttgcttccattcagccacaagagcattattgaggtcggatactgatgttgggcgattaggcctggttcaAAGTCGGcattccaaatcatcccaaatgtgttcgatgaggttgaggtcagggctctgtgcaggcctgtaAAGTTCTTCCACCcggtctcgacaaaccatttctgtatggacctcactttttctgcactggggcattgtcatgctgaaacaggaaagggccttccccaaactgttgacaccaagttggaagcacagaatcatctagaatgtcattgtatgctgtagcattaagatttcccttcactggaactaaggggcctagcccgaacaataaaaaacagccccagaccattattcctcctccatcaaactttacagttggcactatgcattcgggcagttagcattctcctggcttccgccaaacccagattcgtcagtcggactgccagatggtgaagtgtgattcatcactccagagaaggcgtttccactgctctagagt

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU306458 True 620 lncRNA 0.48 1 50531271 50531890

Neighbor

gene id symbol gene type direction distance location
prkra LOC106586253 coding downstream 5940 50520265 ~ 50525331 (-)
LOC110520139 LOC106586251 coding downstream 88341 50440201 ~ 50442930 (-)
pde11a pde11a coding downstream 95197 50378400 ~ 50436074 (-)
nfe2l2a LOC106586247 coding downstream 198365 50325109 ~ 50332906 (-)
evx2 evx2a coding downstream 406651 50119669 ~ 50124620 (-)
LOC110520142 LOC106586254 coding upstream 2189 50534079 ~ 50542288 (-)
LOC110505276 NA coding upstream 11096 50542986 ~ 50543432 (-)
LOC110520143 LOC106586256 coding upstream 14176 50546066 ~ 50585895 (-)
LOC110520149 stk24 coding upstream 87131 50619021 ~ 50636522 (-)
slc15a1a LOC106586093 coding upstream 120743 50652633 ~ 50665607 (-)
G269761 NA non-coding downstream 71 50530954 ~ 50531200 (-)
G269687 NA non-coding downstream 112387 50418537 ~ 50418884 (-)
G269680 NA non-coding downstream 120373 50410694 ~ 50410898 (-)
G269678 NA non-coding downstream 121466 50409472 ~ 50409805 (-)
G269668 NA non-coding downstream 137662 50393291 ~ 50393609 (-)
G269779 ino80d non-coding upstream 69088 50600978 ~ 50605536 (-)
G269817 NA non-coding upstream 170356 50702246 ~ 50702996 (-)
G269865 NA non-coding upstream 246779 50778669 ~ 50778893 (-)
G269866 NA non-coding upstream 247261 50779151 ~ 50779357 (-)
G269883 NA non-coding upstream 299750 50831640 ~ 50833105 (-)
LOC110520121 LOC106581751 other downstream 629733 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 659626 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 963797 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 1028300 49494001 ~ 49503025 (-)
LOC110520160 LOC106586095 other upstream 596550 51126600 ~ 51130404 (-)
fgf9 NA other upstream 941434 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 1065509 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 2176293 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 2718036 53249926 ~ 53251084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G370685 NA non-coding NC_047620.1 CM018566.1 5067122 ~ 5067421 (+)