G269779 (ino80d)


Basic Information

Item Value
gene id G269779
gene name ino80d
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50600978 ~ 50605536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU306478
ctaactGGTCTACTGACCAATCAAATCAGATATCTTCACATCAGATCAAAAGAACAATTACATagtgaaaaaaaaaatctgaattgtgctgcctgtgtaaactctATTTAACATGGATAGGAAGAAGAGGTACCTAGATGAGGGAAAAGGTCTCCCTGCTCCTGATGTCTTTGGGCGCAGAGCTGTACCAGATGCTGTAACCTGGCCAGGCAGGCAGGGGGAGGTGAGAAGGCAGCTGGGCGCATGGCCACCATATGCCGCTGAGTGCTGTCCCAGCTACTGGATGGCAAGGGCGTGGCAGTGAACAGAGCTTTCCTGCTGAGGGGGGGACCGGAGGACTGCACCTGACTGGGAGCCGTGTTGGGGGGCAGCCCGACAGGCAGAAAGGCGGGAGTCTGAGGTGGAGCTGGCTTGCATAAAAAACCCTGCTGCTGTCCTGGGAGGACAAACGAGGGCATGGTGGAGTGCTGGGGGGGCTGGAGGAGTCCTGTCTGCTGTTTACGGGGGAGGTGAgggtggaggggtgaggaggggtgcacacggggaagaggagaggggctaAAGTGCTCTAGAGGTGGTTGGAAAAAGTCAGTGTCGTGATGGTGGAGCTGGAGTTTCTGGCTGAGCACCAGCCGACTGTGTAGTTTCTTCCTGACAACGGAGCCCTTCTGAGCAGCGCACTCTTCCCCGTTTGTGTCGTCCTCATAAAAGGCAAAAGGGTCCAGGATCTCCCCGTCTGGGAGGGGTAAGAGACGGATCTATTGCATTGACTTCATGacatacatttgtatattttTGTAGGTGTGCAAATGATTTCTATAGGTGTGTGAGAGTTGAACAGGCATCTATTACAATGACACTGTACATATCTATGGATATGTCTATGGATATATGTAGGCCTAATGGTTATTTCTGCAAGTATGTGAGAGTTGGATAGACATGTTACATTTAGAGAGGAATGACCCTGAAAACAGAGCTTCAGCATATGGATGGTTCCTCTATAGCTTGGGCTCCTTCTGTTACAGCCTTCACACACTTAGCCATTGTCTGGGAGGCTCTGCTG

Function

symbol description
ino80d Predicted to be involved in DNA recombination and DNA repair. Predicted to be located in nucleoplasm. Predicted to be active in nucleus.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306478 True 1063 lncRNA 0.51 2 50600978 50605536

Neighbor

gene id symbol gene type direction distance location
LOC110520143 LOC106586256 coding downstream 15083 50546066 ~ 50585895 (-)
LOC110505276 NA coding downstream 57546 50542986 ~ 50543432 (-)
LOC110520142 LOC106586254 coding downstream 58690 50534079 ~ 50542288 (-)
prkra LOC106586253 coding downstream 75647 50520265 ~ 50525331 (-)
LOC110520139 LOC106586251 coding downstream 158048 50440201 ~ 50442930 (-)
LOC110520149 stk24 coding upstream 13485 50619021 ~ 50636522 (-)
slc15a1a LOC106586093 coding upstream 47097 50652633 ~ 50665607 (-)
LOC110520150 LOC106586262 coding upstream 60259 50665795 ~ 50788221 (-)
farp1 LOC106586263 coding upstream 183252 50788788 ~ 50896282 (-)
LOC110520154 rap2a coding upstream 293021 50898557 ~ 50911701 (-)
G269762 NA non-coding downstream 69088 50531271 ~ 50531890 (-)
G269761 NA non-coding downstream 69778 50530954 ~ 50531200 (-)
G269687 NA non-coding downstream 182094 50418537 ~ 50418884 (-)
G269680 NA non-coding downstream 190080 50410694 ~ 50410898 (-)
G269678 NA non-coding downstream 191173 50409472 ~ 50409805 (-)
G269817 NA non-coding upstream 96710 50702246 ~ 50702996 (-)
G269865 NA non-coding upstream 173133 50778669 ~ 50778893 (-)
G269866 NA non-coding upstream 173615 50779151 ~ 50779357 (-)
G269883 NA non-coding upstream 226104 50831640 ~ 50833105 (-)
G269908 NA non-coding upstream 268065 50873601 ~ 50873941 (-)
LOC110520121 LOC106581751 other downstream 699440 49895327 ~ 49901575 (-)
LOC110520119 NA other downstream 729333 49867187 ~ 49871681 (-)
LOC110520112 LOC106586230 other downstream 1033504 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 1098007 49494001 ~ 49503025 (-)
LOC110520160 LOC106586095 other upstream 522904 51126600 ~ 51130404 (-)
fgf9 NA other upstream 867788 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 991863 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 2102647 52693956 ~ 52708816 (-)
G272713 LOC106586324 other upstream 2644390 53249926 ~ 53251084 (-)

Expression


Co-expression Network