G276969


Basic Information

Item Value
gene id G276969
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56818645 ~ 56819892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU314446
gaacacactgtgtaaacattcacagtgcaggttggaaaacatttaataactggttgacactcctttggcagcaataacctcaagcaaacgttttctgtagttgcggatcagacctgcacaacggagGAGGAATtctggaccattcctctttacaaaactgtttcagctccacaatattcttgggatgtctggtgtgaaccgctctcttgaggtcatgccacagcatctcaatcgggttgaggtcaggactgactgagCCACTCCataagtttttttttcttctgttcaagccattctgttgttgatttacttctgtattttgggttgttgtcctgttgcatcacctaacTTCTGTTTAGCTTCAATTGTCGGAttgatagccttacattctcctgcaaaatgtattgataagcttgggaattcatttttacATTGATGATAgaaagctgtccaggccctgaggcagcaaagcagccctaaccatgatgctcccttcaccatactttacatttgggatgaggttttgatgttggtgtgctgtgccttttttttctccacacatagtgttgtgtgttccttccttacaaacaacacaactttagttgaatctgtccacagaatattttgccagtagcgctgtggaacatccaggtgctcttttgcgaacatCAGACAGCAGTGGCTtcttccgtggtgtcctcccacgaacaccattcttgtttagtttTTTACGTATCGTGGACTCATCAACATAGATGTtagcatcttccagagatttctgtaagtctttagctgacactctaggattcttcttaacctcattgagcattctgcactgtgctcttgcagtcatcttcgcaggacggccactcctagggagagtagcaacagtgctgaaatttctccatttatagacaatttgtcttaccatggactgacttttagagatacttttgtaaccctttcaagctttatgcaaggcaacaattcttaatcttaggtcttctgagatctcttttgttcgaggcatgtttcacatcaggcaatgcttctatTGAATAGCAAAcaaacattttgtgagtgttttttattatCTAACCAAAATCGCCAATATCGTCTCATTGATTcgactcctgactccaatgagcttttggagaagtcattacctaggggttcacatacttttttcaaCCTAAacagtgaatgtttaaattatatattcaata

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU314446 True 1226 lncRNA 0.41 2 56818645 56819892

Neighbor

gene id symbol gene type direction distance location
LOC110520265 LOC106586394 coding downstream 151054 56652369 ~ 56667591 (-)
LOC110520263 LOC106586393 coding downstream 167692 56600804 ~ 56650953 (-)
arl5a arl5a coding downstream 218072 56589557 ~ 56600573 (-)
LOC110520260 NA coding downstream 239995 56495151 ~ 56578650 (-)
LOC110520254 LOC106586385 coding downstream 769500 56047811 ~ 56049145 (-)
LOC110520269 LOC106586397 coding upstream 12506 56832398 ~ 56844653 (-)
LOC110520270 LOC106586417 coding upstream 47317 56867209 ~ 56917413 (-)
slc49a4 dirc2 coding upstream 323543 57143435 ~ 57206958 (-)
LOC110520276 LOC106586419 coding upstream 412741 57232633 ~ 57260239 (-)
si:dkey-91i10.3 LOC106586420 coding upstream 452581 57270782 ~ 57297762 (-)
G276907 NA non-coding downstream 146053 56671494 ~ 56672592 (-)
G276844 LOC106586392 non-coding downstream 332973 56484375 ~ 56485672 (-)
G276843 LOC106586392 non-coding downstream 334930 56483429 ~ 56483715 (-)
G276840 NA non-coding downstream 338163 56480259 ~ 56480482 (-)
G276835 NA non-coding downstream 348934 56468912 ~ 56469711 (-)
G277110 NA non-coding upstream 148144 56968036 ~ 57046855 (-)
G277168 NA non-coding upstream 234093 57053985 ~ 57054282 (-)
G277245 NA non-coding upstream 368772 57188664 ~ 57189944 (-)
G277259 NA non-coding upstream 389041 57208933 ~ 57209198 (-)
G275250 NA other downstream 1407158 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 1699433 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 2135840 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 3567561 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 4109829 52693956 ~ 52708816 (-)
G277673 LOC106586423 other upstream 583092 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 764494 57584386 ~ 57589183 (-)
G284018 NA other upstream 5894683 62714575 ~ 62715177 (-)
G286522 NA other upstream 8149657 64969549 ~ 64970755 (-)

Expression


Co-expression Network