XLOC_022216 (si:ch211-218g4.2)


Basic Information

Item Value
gene id XLOC_022216
gene name si:ch211-218g4.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 15046544 ~ 15090782 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043861
AATTAAAAGATCGCAGGGTGACGGTAAGAATTTGAGCTGAAGTTGATAACCTGCAGGATTAcggaaagagcttgattagctaagaATAGACATTTCGAGCGACAGTCACTTGTTTCTTTTCCTCGATTTGACTCTTCTGCGTTTCTAGCTGAGGTTGATTCTCGCTCTACAATTCCAGATTTGCAGATCTCAGTGCCTTCTTTGGGTATGCCAGGGGGGATGCTGCTCAAAGATGGCAGCCTGCTCCTGGGTCCAAGGCTGCCATGTTGGTGAAAGTTAACAGCTTTGGAAGAAATCAGTCTCTGGGTCCAGCTTCTGCCCTCCACCTACTTCACCTCAACCCCACCAACAACGGCACTTCATTCAAACCAGGTTACACGGGACAACTCACTAAAATGGCAGCTCCAGGAGACTCCAAGCAAGGTTACCACCTTAAAAAGGGGGATGCCAACTTCTGTCTGGTTTTACCCTCTTCTATCTCTTCCTCTGGCCACCAGCGCTCTGGTGCAGGTACACCTCGCCCCTCTTCCCCTCAGTATGGGGCTACACCCTCAGCACCCATCTATGATGAACCTCCAGCACTGGATGCCCCCATTTATGATGAACCTCCAGTGGAAATGGAAGTAGAAGGGGCACACCACTTACATCGAGGTCCCTACTCCACCAGCCTACCAAGGGGAACCCAGCCTCCTAAACTACTTCAGTTCCCTCATAACAAACACATCTGCAGCTCCTCAGCTAGTGAGTACAGTCCGGCTGGTCGGGAGTGCATCAAACATATGGTAAATGTGGATGCAACAGCATCCAAGCACCAGCCCCAGATATCTAATGCAATTGAGGGTACTTCAAGTTCAACCAGCCCTCAAATTCAACCTCAGTCTCCAGTCTCTGCACAGATCAAGAAAGAAGTGTCTTTAGAGAAGAAGCAATCATGGAGGCTGTTGGAGCCTCGCCACAGCCGTCAAAGCAGCCTCGCCTCCCAGGAGTACCCAGGCCCTGCTGCCGTCACATATCAGGACTCAGGATATTCCACCGGGCCATCTCCAAGTCTCCGGAGGAAGAACCGACGTCGTGCTGCTCTAGGCACTGGATCGGGTCGGCCCGGATCTGTGGGCAGCAGTGGGGAATTGAGTGCATTGAATGAGAAGCTGATGGCAGAAATGAGGGCAGTGGTGAACCGTTCCAATGCACATCATGGAAGCAAGGCCAGTCTGGACACTGAGATGGGCTCGGAAGCCTCTGGAAGTACTGCACGCTCGCCTGTCAGTTCATTAAAAATCGGTGCAAGAGGGGGTGGATCAAGGGAGGACGTGACATCAAGCAACCGATCACTGTGTAGGGCCGGGGCGAGCAACCACGGTGATGTGATGCTGTCACCATTGGTGACAGATGGGCTTGGAAGCCGACAAAAGAGGACTTATGAGAAAGTGGATTCGCTTGAGAAAAGTGGAACATCACAGACCAGCTTGTCTTCTCCAGAACCACCCAGGTCTTCTTCACAGACAGGAACACTGGAATCCAAAATTCAGCAGGACTCAACAACCCGGGACTGTGACCATGAGCGAGCGGGGCGAGGGAATGCCCACATCACtcgtaaaaacaacaacaacagccccCCTCCATCCAACACCAGCACGGGTTACCAGTACCCGTACTCCACCCTCTGCAAGCCTACACCAGATACCAACATGGAAGACTGGGCAAGCAAGAACCTTAACCAGCACACACAAGGCCTTTTTCGTAGACGCGTCTCCATCGCTAACATGCTGTCATGGAACCGTGGCTCCATTAAGAAACCCATGCTGATCACTAATGATCGGGCTATCAAGAAAGAAGCCTGCGAGATGTTCAAACTGGTCCAGGCCTACATGGGCGACAGGCCAGTTAGGTTGGACAAACACCATGCGGCCCTTCAGGTGGTGACAAAGTGCTGGGGGATGCAAGGTTTGAGGGATGAACTCTACGTTCAGTTGGTGCGACAGACCACCGATAACTTGTGTTTGAGAAGCTTGGAGTCCGGTTGGGAGTTGATGGCCATCAGCCTAGCTTTCTTCTCACCTTCACCCAAATTTAGGCACTATTTGGAAGGCTACATCCAACGACACCTCGAGCCCAGCAATGACAAGAAAATACTCCAGAACATCATGGAGCAGCAAGACATCAAAAACAAGAAGAACTCAAAGTCCAGGAAGAAGAGGAGACAGAACAATGACGAAGGAGAGGATGAGGGTCTTCCCATCAGCACTTACGCCAAGTACTGCTACCGTAAGCTGCAGAAAGTGGCCATTACTGGAGGCAAGAAGGGTTTGAGGAAGCCCACACTGGAGGAGATTGATCACAGTCGAAATGCCATCGTGACGCCATCTCTGTTTGGTAGTGCTCTGGAGGAGATCATGGAGAGGCAGAGTGAGCTCTTCCCTGACAGGAAACTGCCTTGGGTGCAGGTGCAGCTCTCTCAGTGTGTCCTGGCTCTGGGTGGAGCTCAGACAGAGGGCATCTTCAGAGTACCAGGGGATATCGATGAAGTGAACGCTCTCAAGCTGCAGGTGGACCAGTGGAAAATTCCAGAAAACCTCTCTGATCCTAATGTCCCAGCGTCTCTTTTAAAGTTGTGGTACAGAGAGCTGGAGGAGCCGGTGATCCCACAGAGCTTCTATAAGCAGTGCATCAGTCATTATGAAGATCCAGACGCAGCTGTCAATGTGGTTCAATCTCTGCCAGAGCTCAACAGACTGGTGCTCTGCTACTTAATCAACTTCTTACAGGTCTTCGCTCAGCCGGTGAATGTGAGTAGGACTAAGATGGACGTGAACAATTTGGCAATGGTGATGGCTCCAAACTGCCTGCGCTGTCAGTCTGACGATCCCCGAATCATCTTTGAAAACACACGCAAAGAGATGTCCTTCCTCCGCATACTCATCGTCCACTTAGACACCAGCTTTATCAAGGGCTTAATCTGAGAGTTTGCTCGTTTGTGGAGAATCATCCAGGAGATGATGGGAATCGAGACGAACGATTCTCATTTTCAAGTTTAGCCAACGTTTTTGACTCACGTCGTGACTCACACAGACATTATTTGAGCTGAATCATTTGACTCATTTGATTGCTCAACAAAACAAATGCATGAGCTTTGTCTATTCGGGTTTGCCATTTCTTCTGGATCAAATCAGCAGGGAAATACCTTCTTCTGACAATCATAATTGTAATAACACTCCTGCAATAGGACTTGCAGAGTATTTCCTTAATTTAATATGGTATGAGTGTTCGGACTATTTAATAGCAGCTGTTTGTAAGCTCAAGTATGAGTGCAGAGAGAATTGCTGGCTCCAGTTTTGTGTACAAGGCTGAAGTGAATTAATATTGCAGAGCTCACATTATCAAGCATGAACGGTGAACGCTTGAGGTCTGGTGCCTTAAATGGAGAATGTTTGCCTGTGTAGACGATTCATAAGTGCCCATGTACATAAACACGTCCTCCGTGTCCCAGGCTCCAAACAAACCACAAGCAGTTTTCAATCTGTCCCAGGGTGGCTTTCCCAGTCGTTCTTTCGTGAGGTAGAAAATCATCTTTCCTAATGTGGGTTGGCTCTATCGCTGATGATTAAGCACTAAACTATTGCAAACAGAACCAGACTGGAAGATCTGCTACATGTTCCCTCCATCGTAAAATATCTGCTGCTCTGACAAATAATTCAACAACTACAGCGTAGCCAAGAATGTCATGTTCAGATATGCCTAGGTCTAATAAACCATTTCAGAAGCAATACAGAcctgaaatactgtatatgcaGTATGCTACATACTATATGCAatcttaaaaacataaatatttcgcCAACTATACCATGCGGTCTGGTCTTACATGCAGTACTTAAAGCTAATGTCAAGCCTTTAACACCTAATTACTAATAATAGTTTCAAAAGGTTTTCTGTAAACAATTCCTGTCTGCCATTGGTTAAACAATCAGATAGCCCtgccccaaaaataaaataacagtctAAACACTCAAACTAAATGTTTACATGTTAGGGCAATTGATCAAATAATCCAGTTTTTTGCTAGATTATGTTGATAATGTGATGTGGATGGTTAAAAAGGGGATGGGGTCACGGTATCACCCAAACTCTCACACACCCAGTAGCAAGCACACAATCATAACACCACAAGATAATTGAACAGGAATGAAAATAACGCTGCAAAGGATGAAAGTACACTATGTAGTCTAACAACATGCCAGTTGTTCAgctgacaagttttttttttctgagaggaCTAAATAATCAGCagataaaaactttaaataattgtaaaaacatttacaatCTAGGACATTAATTCCATGCCAAAATGACTGTAAGtctgtcccacactgctatattttaaattcagtatAGTGTttacatcacaggtgtcaaactgaAGAGccacagttctgcacagtttagctttaaccctaaattaacacac
>TCONS_00043862
AATAAAGCAGCTGCCTATGTGAACAATAGAGAAAGTGTTGACAGTATCCTCCTTCTGTGTGTTTCAGGGATGCTGCTCAAAGATGGCAGCCTGCTCCTGGGTCCAAGGCTGCCATGTTGGTGAAAGTTAACAGCTTTGGAAGAAATCAGTCTCTGGGTCCAGCTTCTGCCCTCCACCTACTTCACCTCAACCCCACCAACAACGGCACTTCATTCAAACCAGGTTACACGGGACAACTCACTAAAATGGCAGCTCCAGGAGACTCCAAGCAAGGTTACCACCTTAAAAAGGGGGATGCCAACTTCTGTCTGGTTTTACCCTCTTCTATCTCTTCCTCTGGCCACCAGCGCTCTGGTGCAGGTACACCTCGCCCCTCTTCCCCTCAGTATGGGGCTACACCCTCAGCACCCATCTATGATGAACCTCCAGCACTGGATGCCCCCATTTATGATGAACCTCCAGTGGAAATGGAAGTAGAAGGGGCACACCACTTACATCGAGGTCCCTACTCCACCAGCCTACCAAGGGGAACCCAGCCTCCTAAACTACTTCAGTTCCCTCATAACAAACACATCTGCAGCTCCTCAGCTAGTGAGTACAGTCCGGCTGGTCGGGAGTGCATCAAACATATGGTAAATGTGGATGCAACAGCATCCAAGCACCAGCCCCAGATATCTAATGCAATTGAGGGTACTTCAAGTTCAACCAGCCCTCAAATTCAACCTCAGTCTCCAGTCTCTGCACAGATCAAGAAAGAAGTGTCTTTAGAGAAGAAGCAATCATGGAGGCTGTTGGAGCCTCGCCACAGCCGTCAAAGCAGCCTCGCCTCCCAGGAGTACCCAGGCCCTGCTGCCGTCACATATCAGGACTCAGGATATTCCACCGGGCCATCTCCAAGTCTCCGGAGGAAGAACCGACGTCGTGCTGCTCTAGGCACTGGATCGGGTCGGCCCGGATCTGTGGGCAGCAGTGGGGAATTGAGTGCATTGAATGAGAAGCTGATGGCAGAAATGAGGGCAGTGGTGAACCGTTCCAATGCACATCATGGAAGCAAGGCCAGTCTGGACACTGAGATGGGCTCGGAAGCCTCTGGAAGTACTGCACGCTCGCCTGTCAGTTCATTAAAAATCGGTGCAAGAGGGGGTGGATCAAGGGAGGACGTGACATCAAGCAACCGATCACTGTGTAGGGCCGGGGCGAGCAACCACGGTGATGTGATGCTGTCACCATTGGTGACAGATGGGCTTGGAAGCCGACAAAAGAGGACTTATGAGAAAGTGGATTCGCTTGAGAAAAGTGGAACATCACAGACCAGCTTGTCTTCTCCAGAACCACCCAGGTCTTCTTCACAGACAGGAACACTGGAATCCAAAATTCAGCAGGACTCAACAACCCGGGACTGTGACCATGAGCGAGCGGGGCGAGGGAATGCCCACATCACtcgtaaaaacaacaacaacagccccCCTCCATCCAACACCAGCACGGGTTACCAGTACCCGTACTCCACCCTCTGCAAGCCTACACCAGATACCAACATGGAAGACTGGGCAAGCAAGAACCTTAACCAGCACACACAAGGCCTTTTTCGTAGACGCGTCTCCATCGCTAACATGCTGTCATGGAACCGTGGCTCCATTAAGAAACCCATGCTGATCACTAATGATCGGGCTATCAAGAAAGAAGCCTGCGAGATGTTCAAACTGGTCCAGGCCTACATGGGCGACAGGCCAGTTAGGTTGGACAAACACCATGCGGCCCTTCAGGTGGTGACAAAGTGCTGGGGGATGCAAGGTTTGAGGGATGAACTCTACGTTCAGTTGGTGCGACAGACCACCGATAACTTGTGTTTGAGAAGCTTGGAGTCCGGTTGGGAGTTGATGGCCATCAGCCTAGCTTTCTTCTCACCTTCACCCAAATTTAGGCACTATTTGGAAGGCTACATCCAACGACACCTCGAGCCCAGCAATGACAAGAAAATACTCCAGAACATCATGGAGCAGCAAGACATCAAAAACAAGAAGAACTCAAAGTCCAGGAAGAAGAGGAGACAGAACAATGACGAAGGAGAGGATGAGGGTCTTCCCATCAGCACTTACGCCAAGTACTGCTACCGTAAGCTGCAGAAAGTGGCCATTACTGGAGGCAAGAAGGGTTTGAGGAAGCCCACACTGGAGGAGATTGATCACAGTCGAAATGCCATCGTGACGCCATCTCTGTTTGGTAGTGCTCTGGAGGAGATCATGGAGAGGCAGAGTGAGCTCTTCCCTGACAGGAAACTGCCTTGGGTGCAGGTGCAGCTCTCTCAGTGTGTCCTGGCTCTGGGTGGAGCTCAGACAGAGGGCATCTTCAGAGTACCAGGGGATATCGATGAAGTGAACGCTCTCAAGCTGCAGGTGGACCAGTGGAAAATTCCAGAAAACCTCTCTGATCCTAATGTCCCAGCGTCTCTTTTAAAGTTGTGGTACAGAGAGCTGGAGGAGCCGGTGATCCCACAGAGCTTCTATAAGCAGTGCATCAGTCATTATGAAGATCCAGACGCAGCTGTCAATGTGGTTCAATCTCTGCCAGAGCTCAACAGACTGGTGCTCTGCTACTTAATCAACTTCTTACAGGTCTTCGCTCAGCCGGTGAATGTGAGTAGGACTAAGATGGACGTGAACAATTTGGCAATGGTGATGGCTCCAAACTGCCTGCGCTGTCAGTCTGACGATCCCCGAATCATCTTTGAAAACACACGCAAAGAGATGTCCTTCCTCCGCATACTCATCGTCCACTTAGACACCAGCTTTATCAAGGGCTTAATCTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-60 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human ARHGAP39 (Rho GTPase activating protein 39).

Ensembl:

ensembl_id ENSDARG00000078145

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043861 False 4468 mRNA 0.47 9 15046544 15090782
TCONS_00043862 True 2810 mRNA 0.51 8 15048052 15088316

Neighbor

gene id symbol gene type direction distance location
XLOC_022215 phf20b coding downstream 9755 14992800 ~ 15036789 (-)
XLOC_022214 sla2 coding downstream 55623 14808221 ~ 14990921 (-)
XLOC_022213 gss coding downstream 277021 14743087 ~ 14769523 (-)
XLOC_022212 NA coding downstream 308158 14735335 ~ 14738386 (-)
XLOC_022211 NA coding downstream 463005 14574498 ~ 14583539 (-)
XLOC_022217 BX537335.1 coding upstream 17066 15107848 ~ 15107962 (-)
XLOC_022218 sulf2b coding upstream 113040 15203822 ~ 15330230 (-)
XLOC_022219 NA coding upstream 341631 15432413 ~ 15563597 (-)
XLOC_022220 NA coding upstream 599749 15690531 ~ 15697049 (-)
XLOC_022221 NA coding upstream 605745 15696527 ~ 15764318 (-)
XLOC_022210 CR388373.2 non-coding downstream 631331 14407888 ~ 14415213 (-)
XLOC_022207 BX897727.1 non-coding downstream 1057062 13989364 ~ 13989482 (-)
XLOC_022203 NA non-coding downstream 1222352 13818507 ~ 13824192 (-)
XLOC_022224 BX511184.1 non-coding upstream 855372 15946154 ~ 15951976 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_01922936_01956597 NA coding CI01000021 null 1922719 ~ 1956597 (-)