G291540


Basic Information

Item Value
gene id G291540
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69377943 ~ 69379231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU330579
GCCGAAGGAGTTTccacacacgctcgcacacacttGCTCTTGTTGACGGAGAAACTTCATGGCTTGTAGTTTGTGTGCAGAAGAATCCTTAAAAAGAGGAAGAGAGTCGTCAAACACTTATCTGTTCACTCAGCCACTCAATCTACTTAGTGTACAGCAATAGTTCTGTGTATGTTTCTGAACAAGTCTTTCACATGATTCTGCATGTTGAAGATTATTAATCATATGCTAGAACCCAAAGAAAGGCACATGTATATTcttattattacactgatatacTTGACCTTGCCAACTGAATAGCCTTACTCTTCCTGTACATACAGAACATagagggaaaggggatacctagtcagttgcacaactgaatgcattcaaccaaaatgtgtcttccgcatttgaCCCAACCCATCTGAATCAGAGTGGTGCGGGCTGACTTCATCAACATCATTGGCACCCAGGGAGCAGTTGttaggggttaagtgccttgctcaaggtgcAGAACAgtagatttttccaccttgccagctcgggatttgaaccagtgacctttcagttactggtctaACACTCTTAATCACTAGACTTCCTGTTGCCCCCTAGATAGGCCTAATGCAATAGTCTTCCTGTGACAATTAGCTAGATAGATTTAGATATACTAGATTTGCCATTTTGGtcaaagacagagagggatgcaTGTACGACTATGCATTTCAAGATTCCTGTGTGTTTTAAATCTACAGTACTTTCAAACACCTTTTTAGAATTTATATTGCCAACTGGCAGGTGTCCCAAATCTAGAACATGAACCCTTCCCTGCTGCTCCCCTCTTTCTTCTGATGGTGAACTCTTGAACTCTAGAACCCTAGAACCAGCCCTGAATCAGTCAAGTATCAAATTAATTAGATGGAAGAAATTAAGCTTCCAGACCTTACAAGCTACTTGTAACCAACAATCTTTCATATAATTAGTTTTGACCCAATCATAGCCTTTTGAAAGTAGAAGACTCTCATTGGCTAACATGACTCATCCTGCCCTTTGGTCTTGGTCAATGAGGGTCAGATTCAGAGATTTATTTCCATATCACCTATACATGATTGCATCCTCTTCTCATATTATGTCATTACTCAACCATATTTTATGTGTTTTGTTATTATTCTTCCCAAATGCTCATTCATAAATACTGTATAAGCAGGACTCATTGAGGAGTAAGACAGAGTCCTCGGGTTGTAGTCCCTAGTTTATGATGAGTAAACAGACCAAAACTATTCCCCTCACCTCCCAGTCCCCAT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU330579 True 1289 lncRNA 0.41 1 69377943 69379231

Neighbor

gene id symbol gene type direction distance location
LOC110520474 LOC106586664 coding downstream 100667 69260503 ~ 69277276 (-)
LOC110520471 NA coding downstream 791201 68584472 ~ 68586742 (-)
LOC110520470 LOC106586656 coding downstream 917364 68455461 ~ 68460579 (-)
LOC110520467 LOC106586653 coding downstream 1085193 68278572 ~ 68292750 (-)
LOC110520466 cd200 coding downstream 1124702 68227272 ~ 68253241 (-)
LOC110520476 LOC106586666 coding upstream 1236 69380467 ~ 69469698 (-)
LOC110520477 LOC106586672 coding upstream 216606 69595837 ~ 69614655 (-)
LOC110520480 ube2al coding upstream 262035 69641214 ~ 69644739 (-)
ankrd10b LOC106586677 coding upstream 270306 69649537 ~ 69675010 (-)
otc otc coding upstream 319234 69698465 ~ 69709169 (-)
G291542 NA non-coding downstream 185 69374577 ~ 69377758 (-)
G291572 NA non-coding downstream 26901 69345002 ~ 69351042 (-)
G291560 NA non-coding downstream 52823 69324347 ~ 69325120 (-)
G291549 NA non-coding downstream 71307 69306427 ~ 69306636 (-)
G291546 NA non-coding downstream 77852 69299878 ~ 69300091 (-)
G291604 NA non-coding upstream 59932 69439163 ~ 69439575 (-)
G291622 NA non-coding upstream 101278 69480509 ~ 69480944 (-)
G291631 NA non-coding upstream 120349 69499580 ~ 69507947 (-)
G291652 NA non-coding upstream 143524 69522755 ~ 69599709 (-)
G291661 col4a2 non-coding upstream 211928 69591159 ~ 69594078 (-)
G291138 NA other downstream 121399 69256005 ~ 69256544 (-)
G290713 LOC106586659 other downstream 527089 68846611 ~ 68850854 (-)
G290602 NA other downstream 653029 68721808 ~ 68724914 (-)
G290598 NA other downstream 660558 68710367 ~ 68717385 (-)
G290567 NA other downstream 730323 68626332 ~ 68647620 (-)
G291901 LOC106586687 other upstream 601115 69980346 ~ 69996605 (-)
G291977 NA other upstream 728309 70107540 ~ 70107950 (-)
G292753 NA other upstream 1340805 70720036 ~ 70720591 (-)
G292919 NA other upstream 1648388 71027619 ~ 71040152 (-)
G293984 NA other upstream 2524083 71903314 ~ 71903908 (-)

Expression


Co-expression Network