XLOC_022438 (nmnat1-rbp7a)


Basic Information

Item Value
gene id XLOC_022438
gene name nmnat1-rbp7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29554591 ~ 29569842 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044261
AACACTTGCAGCTGTCCTGAGAAGGCATCTTTCTCATGATCGATGGCATCACAAGAGAAAATCAAGCTGGTTCTGCTGGCATGTGGCTCCTTCAACCCCATCACAAATATGCATCTGCGAATGTTCGAACTGGCTCGCGATCACCTTGAGGACACTGGAAGATACAAAGTGGTGAAAGGCATAATCTCTCCAGTTGGAGATGGCTATAAAAAGAAAGGCCTGATTGAAGCCTGTCATCGCTTGGAGATGGCTAGACTGGCCACGGAGAGCTCTGAATGGATCACGGTGGATGACTGGGAGAGTCAACAGCCTGAGTGGGTGGAGACGGCCAAAGTTGTTCGGCATCATCATGCAGTTCTTTCCAGCGAGAATAGCAGCAACGGTGATAATGTGGATACTGGGAAGTATAGGAAGAGGAGAAAGATGGAGAAAAAGAGCCCTTCTTGTATGAACCCAAAAGCAGGGATCGGCCTGTACACCCGCAAGATCGCCCTAAAGCTAAAACAGCGTAAAGTGATTGAGCAGCTCGGGGATCGATATGTGGTCAAGACTCTCAGCACTGTCAAAAACTACACTTTCTCATTCAGAGTCAATGaggagtttcaagagttcaccaaGGGACTGGATGACAGACACTGCAAGTCTGCGGTGTCATGGGAGGGGAACAAGCTGGTTTGTGTTCAGAAGGGTGAGAAGAAGAACAGAGGCTGGGCACACTGGATTGAGGATGACAAACTTCATTTGGAGTTGCACTGTGAAGATCAAGTCTGCAAGCAAGTGTTCAAGCGGGTGATCTGAGGTCCTGCTGCTGCTGCAGATGCTTAAAAAGTGCACTGGTGTAAACAACGTTTACGCTTCAGAGTCAGAGTAATATGAGGCGAGGGGGGAAATTAAAAGTTTCAACTTGTGCCTCAAAACCTGACTAGCGGCGGCCTGCACACTGAAGCTGAATGTGTTTAGGAGCAGGATTTGAAGTGCTTTTCCGTTAGAGGGCGCTATAAGACCAAGAACAAACAGACTCACGTCAACAGTAGTTTACCCACAGGAAACACTGCATGTTGACAGAAGTTGTGACACTATTGCCTAATCATGTTTACATGTAATACAAGAGCCGCAGTCACAAACATATAGAGTTATTCTATCACCAGGATCTGTCTAATAAAAGAACAAGCATCTTTTGAATATGAATTTTGTAAGAcactttttgtttattgtttgttaagCTTTACTTTTGGTTAAGGCATAGTCTATGATGCCTACATATACATGTTGTTAATTTGATTacttgaaatcttttttttttttactgtatttgaaaGCCTATTATTGTGCAATAAATTTTGAAACAAGTTA
>TCONS_00044262
TCTGGCATTGTTTGCACTTTGTTTTCCACTGGAACAGTTTGTAGACGACTAATAAAATGCCTGTGAGCTTCTGTGGAACATGGGACATGGTCAGCAATGCCAACTTTGAAGGATACATGATTGCTTTAGGGATCGGCCTGTACACCCGCAAGATCGCCCTAAAGCTAAAACAGCGTAAAGTGATTGAGCAGCTCGGGGATCGATATGTGGTCAAGACTCTCAGCACTGTCAAAAACTACACTTTCTCATTCAGAGTCAATGaggagtttcaagagttcaccaaGGGACTGGATGACAGACACTGCAAGTCTGCGGTGTCATGGGAGGGGAACAAGCTGGTTTGTGTTCAGAAGGGTGAGAAGAAGAACAGAGGCTGGGCACACTGGATTGAGGATGACAAACTTCATTTGGAGTTGCACTGTGAAGATCAAGTCTGCAAGCAAGTGTTCAAGCGGGTGATCTGAGGTCCTGCTGCTGCTGCAGATGCTTAAAAAGTGCACTGGTGTAAACAACGTTTACGCTTCAGAGTCAGAGTAATATGAGGCGAGGGGGGAAATTAAAAGTTTCAACTTGTGCCTCAAAACCTGACTAGCGGCGGCCTGCACACTGAAGCTGAATGTGTTTAGGAGCAGGATTTGAAGTGCTTTTCCGTTAGAGGGCGCTATAAGACCAAGAACAAACAGACTCACGTCAACAGTAGTTTACCCACAGGAAACACTGCATGTTGACAGAAGTTGTGACACTATTGCCTAATCATGTTTACATGTAATACAAGAGCCGCAGTCACAAACATATAGAGTTATTCTATCACCAGGATCTGTCTAATAAAAGAACAAGCATCTTTTGAATATGAATTTTGTAAGAcactttttgtttattgtttgttaagCTTTACTTTTGGTTAAGGCATAGTCTATGATGCCTACATATACATGTTGTTAATTTGATTacttgaaatcttttttttttttactgtatttgaaaGCCTATTATTGTGCAATAAATTTTGAAACAAG
>TCONS_00044263
ATTGATCATTTGTCCAACACTTGCAGCTGTCCTGAGAAGGCATCTTTCTCATGATCGATGGCATCACAAGAGAAAATCAAGCTGGTTCTGCTGGCATGTGGCTCCTTCAACCCCATCACAAATATGCATCTGCGAATGTTCGAACTGGCTCGCGATCACCTTGAGGACACTGGAAGATACAAAGTGGTGAAAGGCATAATCTCTCCAGTTGGAGATGGCTATAAAAAGAAAGGCCTGATTGAAGCCTGTCATCGCTTGGAGATGGCTAGACTGGCCACGGAGAGCTCTGAATGGATCACGGTGGATGACTGGGAGAGTCAACAGCCTGAGTGGGTGGAGACGGCCAAAGTTGTTCGGCATCATCATGCAGTTCTTTCCAGCGAGAATAGCAGCAACGGTGATAATGTGGATACTGGGAAGTATAGGAAGAGGAGAAAGATGGAGAAAAAGAGCCCTTCTTGTATGAACCCAAAAGCAGACCATTCTCATCTGAATCTGCTGTGCGGTGCTGATGTGCTGGAGTCGTTTGGTGTCCCGAACCTCTGGAAGCCTGAAGACATTGAGGAGATTGTGGGCCGCTACGGCGTGACCTGCATCACCAGATGTGGCAGCGATGCAGAAAAGTTCATCAACCAGTCGGACGTCCTGTACAAACACCGAAAGAACATCAGTGTGGTTCGAGAATGGGTGACCAATGAGATCTCAGCCACACACATACGTCGTGCCCTGCGCAGGGGTCAAAGTGTGCGCTACCTGCTGCCTGACTCAGTGGTTCGCTACATTCAGGATCACAGTCTGTACAGTGCTGAGAGCGAACAGAAGAACGCAGGCGTCATTCTCGCTCCTCTGCAGAGATACACCAACACTGAGTAAAGCTGCTTCTGGAACTTTGACAGAAGAACGTTGCACAGAAGATAGTCCATTTTGCTTCCTTGAACTGTTCTGAttgtaatgaatgaataatacatgaTAAGTGCTGTGaaattgtttttgcattttaatgtgttaagttcttttttaaataaagagatTGATACATTCA
>TCONS_00044264
GTCCAACACTTGCAGCTGTCCTGAGAAGGGTAATGTTTGTATACCGTACAGTCTATGTTGTTTCATAGACAGTAAAAAtgtgttgtgtatatatagtgcTGACAACCACACATTTATCAGGTTTTCTGTTTCTTTACTAACGTTACATTTCGCGGCATTTGTTATCATAAATTTGGGGAAGTTTTTTCACTCTGCTCAATGGAAAGCACGAGACTGATGTATTGATTTGGTACATCTTTCTCATGATCGATGGCATCACAAGAGAAAATCAAGCTGGTTCTGCTGGCATGTGGCTCCTTCAACCCCATCACAAATATGCATCTGCGAATGTTCGAACTGGCTCGCGATCACCTTGAGGACACTGGAAGATACAAAGTGGTGAAAGGCATAATCTCTCCAGTTGGAGATGGCTATAAAAAGAAAGGCCTGATTGAAGCCTGTCATCGCTTGGAGATGGCTAGACTGGCCACGGAGAGCTCTGAATGGATCACGGTGGATGACTGGGAGAGTCAACAGCCTGAGTGGGTGGAGACGGCCAAAGTTGTTCGGCATCATCATGCAGTTCTTTCCAGCGAGAATAGCAGCAACGGTGATAATGTGGATACTGGGAAGTATAGGAAGAGGAGAAAGATGGAGAAAAAGAGCCCTTCTTGTATGAACCCAAAAGCAGACCATTCTCATCTGAATCTGCTGTGCGGTGCTGATGTGCTGGAGTCGTTTGGTGTCCCGAACCTCTGGAAGCCTGAAGACATTGAGGAGATTGTGGGCCGCTACGGCGTGACCTGCATCACCAGATGTGGCAGCGATGCAGAAAAGTTCATCAACCAGTCGGACGTCCTGTACAAACACCGAAAGAACATCAGTGTGGTTCGAGAATGGGTGACCAATGAGATCTCAGCCACACACATACGTCGTGCCCTGCGCAGGGGTCAAAGTGTGCGCTACCTGCTGCCTGACTCAGTGGTTCGCTACATTCAGGATCACAGTCTGTACAGTGCTGAGAGCGAACAGAAGAACGCAGGCGTCATTCTCGCTCCTCTGCAGAGATACACCAACACTGAGTAAAGCTGCTTCTGGAACTTTGACAGAAGAACGTTGCACAGAAGA

Function

symbol description
nmnat1-rbp7a Predicted to enable catalytic activity and lipid binding activity. Predicted to act upstream of or within biosynthetic process.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-2 Predicted to enable lipid binding activity. Acts upstream of or within determination of heart left/right asymmetry and left/right pattern formation. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; marginal blastomere; noninvoluting endocytic marginal cell cluster; and pleuroperitoneal region. Orthologous to human RBP7 (retinol binding protein 7).
ZDB-GENE-050417-101 Predicted to enable nicotinamide-nucleotide adenylyltransferase activity and nicotinate-nucleotide adenylyltransferase activity. Predicted to be involved in NAD biosynthetic process. Predicted to act upstream of or within pyridine nucleotide biosynthetic process. Predicted to be active in nucleus. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; heart; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 9 and spondyloepiphyseal dysplasia, sensorineural hearing loss, intellectual developmental disorder, and Leber congenital amaurosis. Orthologous to human NMNAT1 (nicotinamide nucleotide adenylyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000055893 ENSDARG00000091906 ENSDARG00000105748

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044261 False 1353 mRNA 0.44 7 29554591 29569827
TCONS_00044262 False 1016 mRNA 0.42 4 29554594 29556844
TCONS_00044263 False 1042 mRNA 0.47 5 29561918 29569842
TCONS_00044264 True 1107 mRNA 0.48 5 29562045 29569831

Neighbor

gene id symbol gene type direction distance location
XLOC_022437 ube4b coding downstream 900 29507315 ~ 29553691 (-)
XLOC_022436 kif1b coding downstream 48946 29396182 ~ 29505645 (-)
XLOC_022435 pgd coding downstream 160086 29381441 ~ 29394505 (-)
XLOC_022434 sst6 coding downstream 177732 29375676 ~ 29376859 (-)
XLOC_022433 NA coding downstream 196377 29333853 ~ 29358214 (-)
XLOC_022439 clstn1 coding upstream 10742 29580584 ~ 29668286 (-)
XLOC_022440 NA coding upstream 105153 29674995 ~ 29706359 (-)
XLOC_022441 ctnnbip1 coding upstream 141727 29711569 ~ 29751730 (-)
XLOC_022442 pik3cd coding upstream 186761 29756603 ~ 29812667 (-)
XLOC_022443 NA coding upstream 251359 29821201 ~ 29822565 (-)
XLOC_022432 CR677617.1 non-coding downstream 296875 29185852 ~ 29257716 (-)
XLOC_022427 NA non-coding downstream 1100888 28433175 ~ 28453703 (-)
XLOC_022417 NA non-coding downstream 1758668 27788369 ~ 27795923 (-)
XLOC_022416 NA non-coding downstream 1782219 27770481 ~ 27772372 (-)
XLOC_022446 FP101914.1 non-coding upstream 271369 29841211 ~ 29844314 (-)
XLOC_022448 CU695073.1 non-coding upstream 330809 29900651 ~ 29901235 (-)
XLOC_022449 NA non-coding upstream 439421 30009263 ~ 30010819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_11802690_11807444 NMNAT1 coding CI01000001 null 11802565 ~ 11807444 (-)
striped catfish (Pangasianodon hypophthalmus) G159710 NA non-coding NC_047604.1 CM018550.1 5341756 ~ 5342150 (-)
mexican tetra (Astyanax mexicanus) G139798 NA non-coding NC_035912.1 CM008315.1 8122039 ~ 8123343 (+)