LOC110522453 (LOC106608073)


Basic Information

Item Value
gene id LOC110522453
gene name LOC106608073
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29463955 ~ 29478206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600858.2
cacacagaGGTGGGTAGGCATGGCGTCTGGGACGTCGATGGAGGACAGTCCCATGGAGGAGTTGGTGGACCAGGGGTTGGGGATGGAGGAGATGGGACTGAGGAGGCCCTCTCTTAGGGAGACCTACCACCATGACTCCCTGCTGGCTCCAGACACAGACTTCATGAccgATGACCGCAGCTCTGCAGCGAGCGGGATAGATGTAGCAGACCGCCTGACATACCTGGAGCAGCGGATGCAGATGCAGGATGATGAGATCCAGCTTCTGAAGATGGCCCTGGCAGACGTCCTCAAGAGACTCAACATCTCAGAGGAACACCAGGCCACCAACGCCAAGAAAGGACCTGCTGAGAAAGCTAGGCCTGTGTCTCTTGCCCTGCCATCCAGACCATCAATGAACAGCCTTGCCTCTCTGAAGAAAAGCTCCACAAGCTCTACAATGCCCTCTACCTCCACCGCACGGAACTACAGTCCCTTACCAGGAGCATCAGCCAAGAGtGGTGTGAAGAGTTCAGCAGGCAGTTTGAAGGACTGTACCTCTAAGACTCGGCCAGGCCCCCGACCTGGCCCCTCAGGATCAACAGTGGCCCCCGGCAGTAAGAAAGGCGATAGCAAAACCAAGGAGCCTGCAGCCAGTGTAGGGTCGAGGCGTGTGACGCACTGTAAAGTGACTATGCAGATCTATCTGAGCCCCCAAACAAAAAGGACTGGGTCTTCTGAAGTGGCCAAATCAGCCCCCACGGTCCCCAACTCCAGACCAACCAGAACCCCCACCTCCCCTCAGACCAAAGGAGTCCCCCCGACCTCCGACCGGACCAAGACCAAGACACGCAAAACACACCCTGCCTTCACCCTCCCCCTGCAGAAAAGCACCAATCAGAATACGTATTCTCCTCTGGACACGTTCAATTACAAAAGCCCCCTCAAATCACCAAGCCATTACTTCCAAATCTGTTACTAGGCAATAGAGTAGGCTATGAGGATGTAGAAGTTGCTATTAAACACAGGTCTAGGGTCAGATATTGTTCTAATCCTCATAATGGTTAGGGTTGGGTAATCTAATCCTAGATCTGTAGTTAAGGGCAATTTATATTTGGGCTATTACAAGTGTAGGCCTGTAAGAGAAATCGGTTTTCCAGATGTTTGAAAATGTATAGCAGTGAGGTATTTACTGTGGAAGTGGAGGTTGTCTTTAGTAATGTTTGAGATGGACTGATAGTTACAAAGTTTGGGTTTTGAGGTTTTTGTTTGACCAGAAAAGAGAATAGTGAGTTTATTTGATTGTTTTGTTGAATTTCCTAGCACCATCAGTGACCATAGTCCTCTTCACTTTGTTCTCTGTAATTTCTTACATATTTATGTCAACTTGAAGCCTCTATTTTTTTCTGCTGTTTCTTTCTGTCTTAATGTCTCATTTatgttttacattttagtaatttagcagacactcataTCCAGTTTAGTTTATTTGTAGCTTTATGTCAGTAAAATATGGATGTATGAGTTTTCATTGAAATCTCCTTGACTTTGAGGGggatgtacagtatgagtgaatTCTCTTATTCGATGTCTGTGTGTATCTCCGTCTCTGTTGACAGCCATTAATAAACATTTCAGTGATCA
>XM_036976071.1
cacacagaGGTGGGTAGGCATGGCGTCTGGGACGTCGATGGAGGACAGTCCCATGGAGGAGTTGGTGGACCAGGGGTTGGGGATGGAGGAGATGGGACTGAGGAGGCCCTCTCTTAGGGAGACCTACCACCATGACTCCCTGCTGGCTCCAGACACAGACTTCATGAccgATGACCGCAGCTCTGCAGCGAGCGGGATAGATGTAGCAGACCGCCTGACATACCTGGAGCAGCGGATGCAGATGCAGGATGATGAGATCCAGCTTCTGAAGATGGCCCTGGCAGACGTCCTCAAGAGACTCAACATCTCAGAGGAACACCAGGCCACCAACGCCAAGAAAGGACCTGCTGAGAAAGCAGCTAGGCCTGTGTCTCTTGCCCTGCCATCCAGACCATCAATGAACAGCCTTGCCTCTCTGAAGAAAAGCTCCACAAGCTCTACAATGCCCTCTACCTCCACCGCACGGAACTACAGTCCCTTACCAGGAGCATCAGCCAAGAGtGGTGTGAAGAGTTCAGCAGGCAGTTTGAAGGACTGTACCTCTAAGACTCGGCCAGGCCCCCGACCTGGCCCCTCAGGATCAACAGTGGCCCCCGGCAGTAAGAAAGGCGATAGCAAAACCAAGGAGCCTGCAGCCAGTGTAGGGTCGAGGCGTGTGACGCACTGTAAAGTGACTATGCAGATCTATCTGAGCCCCCAAACAAAAAGGACTGGGTCTTCTGAAGTGGCCAAATCAGCCCCCACGGTCCCCAACTCCAGACCAACCAGAACCCCCACCTCCCCTCAGACCAAAGGAGTCCCCCCGACCTCCGACCGGACCAAGACCAAGACACGCAAAACACACCCTGCCTTCACCCTCCCCCTGCAGAAAAGCACCAATCAGAATACGTATTCTCCTCTGGACACGTTCAATTACAAAAGCCCCCTCAAATCACCAAGCCATTACTTCCAAATCTGTTACTAGGCAATAGAGTAGGCTATGAGGATGTAGAAGTTGCTATTAAACACAGGTCTAGGGTCAGATATTGTTCTAATCCTCATAATGGTTAGGGTTGGGTAATCTAATCCTAGATCTGTAGTTAAGGGCAATTTATATTTGGGCTATTACAAGTGTAGGCCTGTAAGAGAAATCGGTTTTCCAGATGTTTGAAAATGTATAGCAGTGAGGTATTTACTGTGGAAGTGGAGGTTGTCTTTAGTAATGTTTGAGATGGACTGATAGTTACAAAGTTTGGGTTTTGAGGTTTTTGTTTGACCAGAAAAGAGAATAGTGAGTTTATTTGATTGTTTTGTTGAATTTCCTAGCACCATCAGTGACCATAGTCCTCTTCACTTTGTTCTCTGTAATTTCTTACATATTTATGTCAACTTGAAGCCTCTATTTTTTTCTGCTGTTTCTTTCTGTCTTAATGTCTCATTTatgttttacattttagtaatttagcagacactcataTCCAGTTTAGTTTATTTGTAGCTTTATGTCAGTAAAATATGGATGTATGAGTTTTCATTGAAATCTCCTTGACTTTGAGGGggatgtacagtatgagtgaatTCTCTTATTCGATGTCTGTGTGTATCTCCGTCTCTGTTGACAGCCATTAATAAACATTTCAGTGATCA
>XM_021600856.2
ggggtttcTCGTGCCAAAGAGGCTCAGTCTGAGGGATTATCATTGTGCTattgtataacacacacacacacacacacacaccaaacccctCACTTTAGGCCAAATTGGAGAGGATAGGAGTGTATAGGCATGAtcaaacactaacacacacccctacacacacacacacatgcacacgcaatCTCAGATCAAGGCTTGAAGCAATGTTGTAAACATCAGCATGCCCCACAACAGCAGAcactacccagagagagagggagcgtgataaaggagagaccgagagaaaaaACCCTTAATAATGTTTCATAACCTCACCATGGACTCAGTCTTTGTGACCTGGATTTGATGCTGTTACAGAGGAAaacaggacaggaagagaggagaggacagttgtTGTGATATACATTTTGTGATCTTggtgtgaggctggttggagcggagaggaagggagaagagctctgtgtgtgttctactgtgtgACAGAACTGGAACAGAGGATGGAACAGTGGAGATGAGAACACTAGCCAGTggaacacaaagagagagagagagctggcaaTCACTAGGATGGAGGAAGATATTGTCTGTCAGACagtggaagagagaaggaggaggagttcTAGAGTGGAGGAAGGGTTACCCAGTATGAGGAATCTTTATGACATCTCCTCACTAGACAGGGTTTCCAAAGATGACCGCAGCTCTGCAGCGAGCGGGATAGATGTAGCAGACCGCCTGACATACCTGGAGCAGCGGATGCAGATGCAGGATGATGAGATCCAGCTTCTGAAGATGGCCCTGGCAGACGTCCTCAAGAGACTCAACATCTCAGAGGAACACCAGGCCACCAACGCCAAGAAAGGACCTGCTGAGAAAGCAGCTAGGCCTGTGTCTCTTGCCCTGCCATCCAGACCATCAATGAACAGCCTTGCCTCTCTGAAGAAAAGCTCCACAAGCTCTACAATGCCCTCTACCTCCACCGCACGGAACTACAGTCCCTTACCAGGAGCATCAGCCAAGAGtGGTGTGAAGAGTTCAGCAGGCAGTTTGAAGGACTGTACCTCTAAGACTCGGCCAGGCCCCCGACCTGGCCCCTCAGGATCAACAGTGGCCCCCGGCAGTAAGAAAGGCGATAGCAAAACCAAGGAGCCTGCAGCCAGTGTAGGGTCGAGGCGTGTGACGCACTGTAAAGTGACTATGCAGATCTATCTGAGCCCCCAAACAAAAAGGACTGGGTCTTCTGAAGTGGCCAAATCAGCCCCCACGGTCCCCAACTCCAGACCAACCAGAACCCCCACCTCCCCTCAGACCAAAGGAGTCCCCCCGACCTCCGACCGGACCAAGACCAAGACACGCAAAACACACCCTGCCTTCACCCTCCCCCTGCAGAAAAGCACCAATCAGAATACGTATTCTCCTCTGGACACGTTCAATTACAAAAGCCCCCTCAAATCACCAAGCCATTACTTCCAAATCTGTTACTAGGCAATAGAGTAGGCTATGAGGATGTAGAAGTTGCTATTAAACACAGGTCTAGGGTCAGATATTGTTCTAATCCTCATAATGGTTAGGGTTGGGTAATCTAATCCTAGATCTGTAGTTAAGGGCAATTTATATTTGGGCTATTACAAGTGTAGGCCTGTAAGAGAAATCGGTTTTCCAGATGTTTGAAAATGTATAGCAGTGAGGTATTTACTGTGGAAGTGGAGGTTGTCTTTAGTAATGTTTGAGATGGACTGATAGTTACAAAGTTTGGGTTTTGAGGTTTTTGTTTGACCAGAAAAGAGAATAGTGAGTTTATTTGATTGTTTTGTTGAATTTCCTAGCACCATCAGTGACCATAGTCCTCTTCACTTTGTTCTCTGTAATTTCTTACATATTTATGTCAACTTGAAGCCTCTATTTTTTTCTGCTGTTTCTTTCTGTCTTAATGTCTCATTTatgttttacattttagtaatttagcagacactcataTCCAGTTTAGTTTATTTGTAGCTTTATGTCAGTAAAATATGGATGTATGAGTTTTCATTGAAATCTCCTTGACTTTGAGGGggatgtacagtatgagtgaatTCTCTTATTCGATGTCTGTGTGTATCTCCGTCTCTGTTGACAGCCATTAATAAACATTTCAGTGATCA

Function

NR:

description
echinoderm microtubule-associated protein-like 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600858.2 False 1623 mRNA 0.47 7 29463955 29478206
XM_036976071.1 False 1626 mRNA 0.47 7 29463955 29478206
XM_021600856.2 True 2147 mRNA 0.46 7 29466782 29478206

Neighbor

gene id symbol gene type direction distance location
LOC110522452 LOC106608075 coding upstream 2573 29422294 ~ 29461382 (+)
LOC110522451 LOC106608077 coding upstream 115791 29339536 ~ 29348164 (+)
LOC118964461 NA coding upstream 277918 29182879 ~ 29186037 (+)
LOC118964462 NA coding upstream 287061 29174963 ~ 29176894 (+)
LOC110522450 LOC106608065 coding upstream 300073 29153474 ~ 29163882 (+)
LOC110522454 LOC105017530 coding downstream 1970 29480176 ~ 29632371 (+)
LOC110522456 LOC106608096 coding downstream 155470 29633676 ~ 29641117 (+)
LOC110522458 mmsa coding downstream 207826 29686032 ~ 29706801 (+)
LOC110522461 LOC106608092 coding downstream 239572 29717778 ~ 29727201 (+)
LOC110522463 LOC106608087 coding downstream 309362 29787568 ~ 29798140 (+)
G339859 NA non-coding upstream 100796 29330943 ~ 29363159 (+)
G339862 NA non-coding upstream 101928 29329904 ~ 29362027 (+)
G339937 NA non-coding upstream 107257 29355831 ~ 29356698 (+)
G339938 NA non-coding upstream 107293 29356197 ~ 29356662 (+)
G340011 NA non-coding downstream 19941 29498147 ~ 29498534 (+)
G340081 NA non-coding downstream 169256 29647462 ~ 29647784 (+)
G340106 LOC106608094 non-coding downstream 205614 29683820 ~ 29684213 (+)
G340107 NA non-coding downstream 207146 29685352 ~ 29685606 (+)
G340125 LOC106608091 non-coding downstream 259787 29737993 ~ 29738401 (+)
G339928 NA other upstream 127016 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 296959 29166518 ~ 29166996 (+)
G339693 NA other upstream 548416 28914599 ~ 28915539 (+)
G339660 NA other upstream 604800 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1862399 27537262 ~ 27601564 (+)
G342538 NA other downstream 1903620 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 1939749 31417955 ~ 31422086 (+)
G342571 NA other downstream 1972927 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 2307659 31785865 ~ 31786206 (+)
G343958 NA other downstream 3216780 32694986 ~ 32704371 (+)

Expression


Co-expression Network