LOC110522458 (mmsa)


Basic Information

Item Value
gene id LOC110522458
gene name mmsa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29686032 ~ 29706801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600876.2
AATTTCACAGATTGTTAAAGCATCTGCTGCGCTCGTCAATGTGGCCCAACCTCGCTGTCTCAGTGAAAGAGCAGATCAACATTTCAGCGTTTGCTCTTTCTACGTCCTCAGCCAGTTTGACGCAATGATTGTGTGACTGCTATTCGGCTAACCTTTTCTAGTGTCTAGAGGTGTCTGTATTTTGGGTCTGACCAGCTGGGGAGTGCGTACTTTTGGGCTAAAAGCAATCACAGTTGCTTCAACCATGGCAGGGATACTAGCAAGGTCGTTATGGAGCAAAAAGGCACCCTTTCAGATGGGTCGCATGTGCTATTCATCATCCGTGCCCACCACCAAGTTGTTCATTGACGGCAAGCTTGTTGAGTCAAACACCTCAGAATGGCTGGACATTCACAACCCTGCTACCAATGAGGTGGTGAGTCGTGTGCCCAAAGCCACCCACACGGAGATGCTGGCTGCAGTAGACTCCTGCTCCAGGGCCTATGCCTCCTGGTCCGACACTTCCATCCTCACCCGCCAGCAGATCTTCCTCCGATACCAGCAGCTCATCAAGGAAAACATTAAAGAGCTGGCCAGGCTGATCACCCTGGAGCAAGGCAAGACTCTAGCTGACGCGGAGGGAGACGTCTTCAGAGGACTGCAGGTGGCAGAGCACGCCTGCAGCATCACCTCCCTGATGATGGGGGAGACCCTGCCCTCCATCACCAAAGACATGGATACCTACACCTATCGCCTTCCCATCGGGGTGTGTGCCGGCATCGCCCCCTTCAACTTCCCTGCCATGATTCCTCTGTGGATGTTCCCCATGGGCATGGTGTGTGGCAACACCTACCTGATGAAGCCCTCCGAGCGCGTCCCAGGGTGCACCATGCTGCTGGCCAAGCTGCTACAGGATGCAGGGTTGCCCGACGGGACCCTGAACATCATCCATGGACAGCACGCTGCCGTGAATTTCATTTGTGACCACCCAGCCATCAAGGCCATCAGCTTTGTGGGCTCCAACCAGGCAGGAGAGTACATCTACGAGAGAGGATCTAAGAACGGCAAGAGAGTGCAGTCCAACATGGGAGCCAAGAACCACGGTGTGGTGATGCCTGACGCCAACAAGGAGAACACTCTGAACCAGCTGGTGGGCGCGGCCTTTGGCGCAGCAGGACAGCGTTGTATGGCTCTCTCAACTGCCATTCTGGTAGGCGAAGCTCGTGATTGGCTTCCAGAACTGGTGGAGCGCTCCAAAGCCCTGCGCGTCAATGCAGGTGACCAGCCAGGTGCTGACGTGGGTCCACTGATTTCCCCTGAGGCCAGGGCCCGTGTTGAGATGTTGATCCAGAGTGGTGTGGACGAGGGAGCTACGCTGCTGCTGGATGGACGCAATGTCCACGTCAAAGGATACGAGAATGGAAACTTCGTAGGACCCACTATCATCGGCAACGTTACGCCAGCGATGAAGTGCTACACGGAGGAGATCTTTGGGCCTGTACTGGTGGTTCTGGAGGCAGACACTCTGGACGATGCCATCTCCCTGGTCAACAACAACCAGTATGGCAACGGAACCGCCATCTTCACTACCAACGGCGCTACCGCCCGCAAGTACACACACGAGGTGGATGTCGGACAGATTGGAGTGAACGTGCCCATCCCCGTCCCCCTGCCCATGTTCTCCTTTACCGGCTCCAGGGGTTCCTTCAGGGGGGACACCAACTTCTACGGCAAACAGGGCATTCAGTTCTACACTCAGATCAAGACGGTGACATCACAGTGGAAGGCTGAGGACGCCACGACTAAGGCTGCAGCAGTTACCATGCCAACCATGCGCTAAACGGAATGTAAATGTTGTGTTCTCTCCCTggcacaatgttctactgactgacATTCACACGGGGTTAGCACCCAAGGGGTATGGATAACTGATACGACTTTATTGCAGTCCTGGAATATGTTTTATACAGAGTGTACTACGTGAGCAAAGTTTTTATACTTTGGAGTTTGACCCTATTAATGAAAGTAATGTTTCTTATAGGGTGGTGGCAGATTAGATCTGAAATGTACTGTTACTATAGCCTCAAACTCTTCTGCTGCTCCTGGGAGTTCCATGATAACGATGGACTTGGTGGAATGCAAAGGGTGAGAGAAGGCCTCTGTTGCCCATAGGCAAAGATCTAGGATCAGTACTCCCCTCGCATCCTAACTATAACCATTAGGAGGGGAACAGCGGTACACTGACTGTAGATAAGCATCTAGAAGTGGCTTCACCTGAGTCCCACAGCCATCATGGTCCTTAGTGTCCCCAACCTGTGGAACAGAGACACTGTCAAAGTGTTAGTATTTGTGTGAGTGCATTCTAAAAATCCAATTTGTAACATTAGTGAGCGGTGTTCCTGTTTTACATGGAATAAAGATATCCATTGAA

Function

symbol description
mmsa malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase

NR:

description
methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity molecular_function

KEGG:

id description
K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600876.2 True 2410 mRNA 0.52 12 29686032 29706801

Neighbor

gene id symbol gene type direction distance location
LOC110522456 LOC106608096 coding upstream 44915 29633676 ~ 29641117 (+)
LOC110522454 LOC105017530 coding upstream 53661 29480176 ~ 29632371 (+)
LOC110522453 LOC106608073 coding upstream 207826 29463955 ~ 29478206 (+)
LOC110522452 LOC106608075 coding upstream 224650 29422294 ~ 29461382 (+)
LOC110522451 LOC106608077 coding upstream 337868 29339536 ~ 29348164 (+)
LOC110522461 LOC106608092 coding downstream 10977 29717778 ~ 29727201 (+)
LOC110522463 LOC106608087 coding downstream 80767 29787568 ~ 29798140 (+)
LOC110522467 LOC106608085 coding downstream 131568 29838369 ~ 29842910 (+)
LOC110522470 prpf39 coding downstream 235375 29942176 ~ 29952127 (+)
LOC110522472 rs30 coding downstream 245660 29952461 ~ 29957558 (+)
G340107 NA non-coding upstream 426 29685352 ~ 29685606 (+)
G340106 LOC106608094 non-coding upstream 1819 29683820 ~ 29684213 (+)
G340081 NA non-coding upstream 38248 29647462 ~ 29647784 (+)
G340011 NA non-coding upstream 187498 29498147 ~ 29498534 (+)
G340125 LOC106608091 non-coding downstream 31192 29737993 ~ 29738401 (+)
G340153 NA non-coding downstream 63005 29769806 ~ 29770443 (+)
G340155 NA non-coding downstream 91458 29798259 ~ 29803141 (+)
G340182 NA non-coding downstream 119470 29826271 ~ 29826549 (+)
G340193 NA non-coding downstream 144439 29851240 ~ 29851549 (+)
G339928 NA other upstream 349093 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 519036 29166518 ~ 29166996 (+)
G339693 NA other upstream 770493 28914599 ~ 28915539 (+)
G339660 NA other upstream 826877 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 2084476 27537262 ~ 27601564 (+)
G342538 NA other downstream 1675025 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 1711154 31417955 ~ 31422086 (+)
G342571 NA other downstream 1744332 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 2079064 31785865 ~ 31786206 (+)
G343958 NA other downstream 2988185 32694986 ~ 32704371 (+)

Expression


Co-expression Network